Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E22
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    29   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   6.7  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    26   6.7  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   8.8  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    26   8.8  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 203 FYRMSPFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTLRQIEN 337
           FYR+S  N    +  Y          + +P F R W+NT  +I+N
Sbjct: 7   FYRLSSKNLLSFKTCYSFYSTKASSPLPQPSFRRFWKNTATKIQN 51


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -3

Query: 835 IESYSTSCSTDQNQS*IIKITLDKSYYTXTAEGS*DPTFFITGPVCVIGTIFSPVEGKAS 656
           +E  STSC+TD + S  I      S  + +  GS       T   C   T   P  G +S
Sbjct: 70  VEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSS 129

Query: 655 TLGAVT 638
               +T
Sbjct: 130 LSTPIT 135


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 661 ASTLGAVTVRTXSEDNFDSTVSGKQPCGSAYRLMN 557
           A+ +GA+ +   S +N  S + GK+ C S  R+M+
Sbjct: 700 ATPIGAIRIHLRSANNLHSKIPGKK-CDSYARIMS 733


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 212 MSPFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTLR-QIENVMKPIEQLAS 367
           + P N+    +  +   F  F D+V PQ  RPW    R  I    KP ++ A+
Sbjct: 85  LGPVNEVEEAEMLKWMCFINF-DIVTPQNVRPWVGMFRGNIPYEEKPFKESAT 136


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 218 PFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTL 322
           PF+ S+  DRY++SP++  R+  +P  Y    N L
Sbjct: 280 PFS-SLPLDRYQISPYSCLRNTGDPWEYMSRSNGL 313


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 588 CLPDTVESKLSSDXVLTVTAPKVLALP---STGEKIVPITHTGPVMKKVGSQEPSAVXV 755
           C+ D  ES  S    +  +APK+ +LP   +   +    T   PVM++  S   + + V
Sbjct: 47  CINDLKESDASEHVTVAESAPKIASLPISKTNDAERSQQTTKAPVMERTESSHQATLSV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,919
Number of Sequences: 5004
Number of extensions: 63759
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)