Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E22
(939 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 33 0.43
03_02_0484 + 8805053-8805538 33 0.43
03_02_0483 - 8804021-8804485 33 0.43
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 33 0.43
01_01_0229 - 1943473-1943922 33 0.43
01_01_0231 + 1951047-1951499 32 0.76
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 31 1.0
11_02_0041 - 7669692-7670312 31 1.3
01_01_0227 + 1933247-1933699 31 1.3
04_04_1423 - 33455818-33457076,33457165-33457201 29 4.0
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 5.3
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 29 7.1
08_01_0863 + 8437188-8437337,8437649-8437739,8437913-8438002,843... 29 7.1
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 7.1
04_04_0947 - 29583775-29583931,29584030-29584256 28 9.3
03_03_0165 + 14982725-14984128 28 9.3
>03_02_0485 - 8808139-8808618
Length = 159
Score = 32.7 bits (71), Expect = 0.43
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S +F+RR+ LP+ P+ +++ + + VLTVT PK
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 144
>03_02_0484 + 8805053-8805538
Length = 161
Score = 32.7 bits (71), Expect = 0.43
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S +F+RR+ LP+ P+ +++ + + VLTVT PK
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 32.7 bits (71), Expect = 0.43
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S +F+RR+ LP+ P+ +++ + + VLTVT PK
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 32.7 bits (71), Expect = 0.43
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S QF+RR+ LP+ D V++ L + VLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 32.7 bits (71), Expect = 0.43
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S QF+RR+ LP+ D V++ + + VLTVT PK
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 31.9 bits (69), Expect = 0.76
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S QF+RR+ LP+ D V++ + + VLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 224 NQSMHRDRYRMSPFNQFRDVVEPQFYRPWENT 319
++SMHRDRY P +FR E R WEN+
Sbjct: 117 HRSMHRDRYERQPSGRFRQWPE----RQWENS 144
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 555 QFIRRYALPQGCLPDTVESKLSSDXVLTVTAPKVLALPSTGEKIVPITHTG 707
+F RR+ +P G V ++L D VLTVT PKV ++V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>01_01_0227 + 1933247-1933699
Length = 150
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 549 SRQFIRRYALPQGCLPDTVESKLSSDXVLTVTAPK 653
S +F RR+ LP+G D V + + + VLTVT PK
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>04_04_1423 - 33455818-33457076,33457165-33457201
Length = 431
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 479 HIYFIR*KMLYVDIDLKLLVVGCDFRAHLXEAPFDSSPKPAARSVSLRFL 330
HI +R D D+K LV + L FDSSP PAA + L
Sbjct: 156 HINLVRLYGFCFDADVKALVYEYMEKGSLDRYLFDSSPSPAAERIGFEKL 205
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 108 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 200
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 28.7 bits (61), Expect = 7.1
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 163 ISSDGSRTLRPAGFLQDVAFQPIDAS*PLQNVSVQSISRRC*TAVLQT----LGKY 318
+SSD + T+R A L A P+ L N+ + +S RC +AV + LG+Y
Sbjct: 529 LSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRY 584
>08_01_0863 +
8437188-8437337,8437649-8437739,8437913-8438002,
8438099-8438202,8439137-8439277
Length = 191
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 304 SVKLRFNNVAKLIERRHSVAVTMHRLVERRHPVEILRAEEFSIHQTKWSLQIVH 143
+V++ N + I H AVT + E + P+EIL A+ ++ + Q VH
Sbjct: 84 AVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVH 137
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 238 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 122
+H+ +RH +E L ++ S HQ + Q H WQ HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 28.3 bits (60), Expect = 9.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 269 D*TETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 165
D E SGH AS A S R P GR DP D+
Sbjct: 11 DDIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45
>03_03_0165 + 14982725-14984128
Length = 467
Score = 28.3 bits (60), Expect = 9.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 537 HGYVSRQFIRRYALP-QGCLPDTVESKLSSDXVLTVTAPKVLALPSTGEKIVPITHTG 707
H Y R+ + Y+L GC + L+ + + T P+ LAL + E I P +TG
Sbjct: 151 HRYGMREDVAAYSLAGMGCSAGLISLDLARNTL--ATRPRALALVVSTESIAPNWYTG 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,918,016
Number of Sequences: 37544
Number of extensions: 398850
Number of successful extensions: 945
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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