Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E21
         (864 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050463-1|AAH50463.1|  953|Homo sapiens conserved nuclear prote...    30   9.5  
BC001584-1|AAH01584.1|  718|Homo sapiens LOC124245 protein protein.    30   9.5  

>BC050463-1|AAH50463.1|  953|Homo sapiens conserved nuclear protein
            NHN1 protein.
          Length = 953

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = -1

Query: 783  PDKAXRXG*TGVRAHXPSLERTTYTXXEIPTAXAMRKRHASRREKGGQVSGKRQGRXQES 604
            PD+  R   +G R   P  ER      + P A A RKR  S + K         G+  + 
Sbjct: 853  PDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSKVTSVPGKASDP 912

Query: 603  ARGSXPGGNA 574
               S   G A
Sbjct: 913  GAASTKSGKA 922


>BC001584-1|AAH01584.1|  718|Homo sapiens LOC124245 protein protein.
          Length = 718

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = -1

Query: 783 PDKAXRXG*TGVRAHXPSLERTTYTXXEIPTAXAMRKRHASRREKGGQVSGKRQGRXQES 604
           PD+  R   +G R   P  ER      + P A A RKR  S + K         G+  + 
Sbjct: 618 PDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSKVTSVPGKASDP 677

Query: 603 ARGSXPGGNA 574
              S   G A
Sbjct: 678 GAASTKSGKA 687


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,752,207
Number of Sequences: 237096
Number of extensions: 2316793
Number of successful extensions: 6483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6483
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)