Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E20
(1021 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.19
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.60
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.60
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 1.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/76 (23%), Positives = 18/76 (23%), Gaps = 2/76 (2%)
Frame = -1
Query: 508 PXXPPRGXXGGXXXXRGXXXPPPXXPPXGXXXXXPP--XXXXGGXXPPXXXXXXXXXGGG 335
P PP PPP PP PP PP G
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350
Query: 334 XXXPPPPPXGXPXXPP 287
PP P PP
Sbjct: 351 IPLPPQGRSAPPPPPP 366
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/58 (25%), Positives = 15/58 (25%)
Frame = +1
Query: 553 PPXXPXXGXXXXXXXXXXXSXXXXPPPPPPXXGGXXGXXXXXXPXXPPXPXPPXSGXP 726
PP P S PPPPPP G P PP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 25.8 bits (54), Expect(2) = 0.19
Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Frame = -1
Query: 577 PPXXGGGGXXXXXXGXXPXXXPXPXXPPRGXXGG--XXXXRGXXXPPPXXP 431
PP G G P P PPR G +G PPP P
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 24.2 bits (50), Expect(2) = 0.19
Identities = 19/87 (21%), Positives = 19/87 (21%), Gaps = 2/87 (2%)
Frame = -1
Query: 448 PPPXXPPXGXXXXXPPXXXXGGXXPPXXXXXXXXXGGGXXXPPPPPXGXPXXPPXXXXXX 269
PPP P P PP PP P P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 268 XXGXXXP--PKGXPXGPGAXXGXPX*P 194
P P G P P P P
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.60
Identities = 28/103 (27%), Positives = 28/103 (27%)
Frame = +3
Query: 219 APGPXGXPFGGXXHPXXXXXXXXGGXXGXPXGGGGGXXXPPPXKXXXXXXXGGXXPPXXX 398
A G G GG G G GG GG PP GG
Sbjct: 160 AAGLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHH 219
Query: 399 XGGXXXXXPXGGXXGGGXXXPLXXXXPPXXPRGGXXGXGXXXG 527
GG GG GG P P GG G G G
Sbjct: 220 HGGHGG---FGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.60
Identities = 18/69 (26%), Positives = 18/69 (26%)
Frame = -3
Query: 506 PXPPPGXXGGXXXXKGXXXPPPXXPPXXXVXXPPPXSXXGGGGXPXXXXXXXFXGGGXXX 327
P PPP PPP PPP G G P GG
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Query: 326 PPPXPXGGP 300
P P P
Sbjct: 793 YAPAPQAEP 801
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/58 (25%), Positives = 16/58 (27%)
Frame = +1
Query: 535 PXXXXXPPXXPXXGXXXXXXXXXXXSXXXXPPPPPPXXGGXXGXXXXXXPXXPPXPXP 708
P PP P G + PPPPPP G P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -3
Query: 809 PXXPPPPPXXXXXXXXPPXXPPXXXGXXG 723
P PPPPP PP PP G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = -1
Query: 448 PPPXXPPXGXXXXXPPXXXXGGXXPPXXXXXXXXXGGGXXXPPPPPXGXP 299
PPP G PP G PP GG P P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +1
Query: 625 PPPPPPXXGGXXGXXXXXXPXXPPXPXPPXSGXPXXPXXXGGXXGG 762
PPPPPP P P P P G P P G G
Sbjct: 732 PPPPPP---AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 325 PPPPPXGXPXXPPXXXXXXXXGXXXPPKGXPXGPGAXXGXPX*P 194
PPPPP P P PP G P G A G P P
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSA---LPPAGPPAGATAISGNPGMP 1923
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = -3
Query: 800 PPPPPXXXXXXXXPPXXPPXXXGXXGXPEXGGXGXGGXXG 681
PPPPP PP P P G G G
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPG 1921
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -3
Query: 809 PXXPPPPPXXXXXXXXPPXXPP 744
P PPPPP PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 625 PPPPPPXXGGXXGXXXXXXPXXPPXPXPP 711
PPPPPP G P PP P PP
Sbjct: 9 PPPPPPPPG-------FEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.156 0.547
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,089
Number of Sequences: 5004
Number of extensions: 33204
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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