Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E18
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.18 |||mitochondrial distribution and morphology protein ...    69   1e-12
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    29   0.70 
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   8.6  

>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +2

Query: 254 NSIGEECTDLKKKYDDCFNTWFSERFLKGDQDDSVCAGIFKIYQECVKNAMKQQSID 424
           +S+ EECT  KKKYD CFN W++ +FLKGD  +  C  +F  Y+ C+  A+K + ID
Sbjct: 3   SSVSEECTPAKKKYDACFNDWYANKFLKGDLHNRDCDELFAEYKSCLLKALKTKKID 59


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 103 INCTHYLILVSTTKSERNIDCK 168
           +NCTHYL++   +K  + IDCK
Sbjct: 375 VNCTHYLLVDLFSKYGKVIDCK 396


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 510 WSVSLNPQPVAISLGKFLKIPCXYQD 587
           W V  NP P  ++L   LKIP   QD
Sbjct: 332 WYVLQNPFPNKLNLNMLLKIPGRLQD 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,489
Number of Sequences: 5004
Number of extensions: 60503
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)