Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E17
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 61 1e-09
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 34 0.12
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 34 0.12
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 34 0.12
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 34 0.12
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 34 0.12
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 34 0.12
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 29 3.4
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 29 3.4
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 QLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 338
Q+ DVDP TGR S Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 33 QIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +2
Query: 92 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 184
MQNDAG+ V+LY PRKCS+SNR+I KDHAS
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 251
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 895
Query: 252 VVCGAIRRMGES-DDCIVRLTKKDGILA 332
V A +GE+ C++ +T IL+
Sbjct: 896 SV-RASNLLGEAIRQCVITVTPAGQILS 922
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 251
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 252 VVCGAIRRMGES-DDCIVRLTKKDGILA 332
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 251
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 252 VVCGAIRRMGES-DDCIVRLTKKDGILA 332
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 251
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 252 VVCGAIRRMGES-DDCIVRLTKKDGILA 332
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 251
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 252 VVCGAIRRMGES-DDCIVRLTKKDGILA 332
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQXQLVIADVDPATGRAADTSKMY 251
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 252 VVCGAIRRMGES-DDCIVRLTKKDGILA 332
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 90 KCRTTPVNSLTCTARGNARPATASSTLRTMLQXQLVIA--DVDPATGRAADTSKM 248
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 90 KCRTTPVNSLTCTARGNARPATASSTLRTMLQXQLVIA--DVDPATGRAADTSKM 248
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,650
Number of Sequences: 27780
Number of extensions: 211555
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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