Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E16
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.097
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 22/60 (36%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
 Frame = -1

Query: 862 GGXXXXFXGGGXGPPPXXGGXXFXXXXPXGG-----GGXXXXXXGPPPXXGGGGXXXXPP 698
           GG    F GG  GPPP  GG  F      GG     GG      GP    GG G     P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG--FGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP 244



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = -1

Query: 871 FXGGGXXXXFXGG-GXGPPPXXGGXXFXXXXPXGGGGXXXXXXGPPPXXGGG 719
           F G G      GG G GP    GG       P G GG      G P   GGG
Sbjct: 213 FGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 717 PPPPXXGGGPXXXXXSPPPPXGXKXXK 797
           PPPP  G  P      PPPP   K  K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +2

Query: 713 GXPPPPXGGXAXXXXXXXPPPXGXXXXKXXXPPXGGGPXPPP 838
           G PP   G          PPP          PP G    PPP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 31/125 (24%), Positives = 33/125 (26%), Gaps = 3/125 (2%)
 Frame = +2

Query: 473 KKRXPPPP---XXXRGVXFFWGASXXFRXXXXXXPPPPGGXXXGXGPXXXXXXXXXXXXX 643
           KKR PPPP      RG       S          PPPP     G  P             
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSS--NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365

Query: 644 XXXXPPXGXPPXKXXXXGGXXXXGXPPPPXGGXAXXXXXXXPPPXGXXXXKXXXPPXGGG 823
               P  G  P              PPP   G +        PP G    +   PP    
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL----PPLG-NASRTSTPPVPTP 420

Query: 824 PXPPP 838
           P  PP
Sbjct: 421 PSLPP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,419
Number of Sequences: 5004
Number of extensions: 32336
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)