Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E14
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0360 - 3160723-3160821,3160911-3160995,3161099-3161205,316... 207 1e-53
06_01_0270 - 2001569-2001589,2001852-2001980,2002966-2003055,200... 88 1e-17
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 32 0.74
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 30 3.0
03_06_0613 - 35090377-35090478,35090686-35090839,35090925-350910... 29 4.0
07_03_1108 - 24034163-24034816,24034914-24035273,24035367-24035909 29 6.9
07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934 28 9.2
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 28 9.2
>08_01_0360 -
3160723-3160821,3160911-3160995,3161099-3161205,
3163066-3163155,3163265-3163408,3163572-3163622,
3163735-3163844,3163928-3164123
Length = 293
Score = 207 bits (505), Expect = 1e-53
Identities = 102/199 (51%), Positives = 136/199 (68%), Gaps = 3/199 (1%)
Frame = +3
Query: 180 MLRRQARLRREYLYRKSAEEKQKSIQAKKDQIKRSLEENIPIHGDLRKDAIALQKRIEYE 359
MLRR RLRREYLYRKS E K++ KK +++ +L+E PI +LR + +AL++ I+ E
Sbjct: 1 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRLREALDEGKPIPTELRNEELALRREIDLE 60
Query: 360 DKGPERVAVIGGFSGGANTLNSQDDEYRYAGVEDPKIMITTSREPSARLKMFVKELRLIF 539
DK A + DDEY A + +PKI++TTSR PSA L FVKEL+++F
Sbjct: 61 DKD------------SAVPRSLIDDEYAGAALREPKILLTTSRNPSAPLTQFVKELKVVF 108
Query: 540 PNSQRMNRGGYEMSQLIHACRAXDVTDFIVVHEHRGVPDSLVICHLPYGPTASFTLSGVV 719
PNSQRMNRGG +S+++ +CR+ D+TD ++VHEHRG PD L++CHLP+GPTA F L VV
Sbjct: 109 PNSQRMNRGGQVISEIVESCRSHDITDLVLVHEHRGQPDGLIVCHLPFGPTAYFGLLNVV 168
Query: 720 MRHDIPD---LGPMSEQYP 767
RHDI D +G MSE YP
Sbjct: 169 TRHDIKDRKAMGKMSEAYP 187
>06_01_0270 -
2001569-2001589,2001852-2001980,2002966-2003055,
2003361-2003466,2003985-2004064,2005895-2005977,
2006057-2006126,2006208-2006291,2006445-2006540,
2007555-2007635,2007844-2007999
Length = 331
Score = 87.8 bits (208), Expect = 1e-17
Identities = 42/102 (41%), Positives = 62/102 (60%)
Frame = +3
Query: 462 PKIMITTSREPSARLKMFVKELRLIFPNSQRMNRGGYEMSQLIHACRAXDVTDFIVVHEH 641
PK++ITT R S R F++EL + PNS + RG YE+ +++ D T +VVH +
Sbjct: 99 PKVLITTCRFNSGRGPAFIEELMQVIPNSCYVKRGTYELKKIVEYANNRDFTSLVVVHTN 158
Query: 642 RGVPDSLVICHLPYGPTASFTLSGVVMRHDIPDLGPMSEQYP 767
R PD+L+I +LP GPTA F LS +++R DI + G + P
Sbjct: 159 RREPDALLIINLPAGPTAHFKLSKLILRKDIKNHGNPTSHKP 200
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 31.9 bits (69), Expect = 0.74
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 255 QAKKDQIKRSLEENIPIH--GDLRKDAIALQKRIEYEDKGPE 374
QA ++ KRSLEE++ H GD RK + L YE GPE
Sbjct: 125 QAYHERFKRSLEEDVAAHATGDFRKLLVPLISAYRYE--GPE 164
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 150 EFNYSNDKPKMLRRQARLRREYLYRKSAE-EKQKSIQAKKDQIKRSLEENI 299
+ N +K L+ + +E KSAE K K + +DQ+KR++++N+
Sbjct: 603 KLNELQEKHTQLQSDLQKSKERKEEKSAELSKNKELLKSQDQLKRNIDDNL 653
>03_06_0613 -
35090377-35090478,35090686-35090839,35090925-35091004,
35091191-35091340,35091920-35092045,35096500-35096916
Length = 342
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 300 PIHGDLRKDAIALQKRIEYEDKGPERVAVIGGFSGGANTLNSQD 431
P+ G++ K AI + K +EY G +VI G +N L S+D
Sbjct: 184 PVAGEVFKIAIGIAKALEYLHNGSITQSVIHGDVKSSNILLSED 227
>07_03_1108 - 24034163-24034816,24034914-24035273,24035367-24035909
Length = 518
Score = 28.7 bits (61), Expect = 6.9
Identities = 29/92 (31%), Positives = 42/92 (45%)
Frame = +3
Query: 132 KIKLVIEFNYSNDKPKMLRRQARLRREYLYRKSAEEKQKSIQAKKDQIKRSLEENIPIHG 311
K ++V + + + K R A R + R+ E++Q+ K Q + E I G
Sbjct: 14 KEEVVRGLSPARSRGKSPARSASPGRMLIPRRRKEKQQQPPPEKLLQ-QYFAEPLISRSG 72
Query: 312 DLRKDAIALQKRIEYEDKGPERVAVIGGFSGG 407
LR AL IE D PER+A G F+GG
Sbjct: 73 SLRPGGEALAPLIEGPD--PERLAAGGDFAGG 102
>07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934
Length = 363
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 186 RRQARLRREYLYRKSAEEKQKSIQAKKDQIKRSLEENIPIHGDLRK 323
RRQ L E RK E + + I A+ D+ KRS E ++GD +
Sbjct: 156 RRQNALMLEEKERKERERRGEII-AEADEFKRSFAEKRKLNGDTNR 200
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 231 PISGINTRGVIAPVVAAFLVCRYY 160
PISG+N+ G++ P A+ L + Y
Sbjct: 157 PISGLNSDGILGPSTASVLAAKMY 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,443,770
Number of Sequences: 37544
Number of extensions: 400354
Number of successful extensions: 1097
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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