Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E12
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0486 - 3455030-3455770                                           29   6.6  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   8.7  

>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 489 PPXXXKXXPFXPXPXXEXFXPPXPFFFXPFXXGGXPXXPPP 611
           PP      P+ P P      PP P    P+     P  PPP
Sbjct: 106 PPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPP 146


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 489 PPXXXKXXPFXPXPXXEXFXPPXPFFFXPFXXGGXPXXPPP 611
           PP      P  P P      PP P F  PF     P  PPP
Sbjct: 235 PPPPFLPFPLPPIPFLTPPSPPPPAF--PFPLPPWPWAPPP 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,856,255
Number of Sequences: 37544
Number of extensions: 161542
Number of successful extensions: 165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)