Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E11
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 154 1e-38
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 87 4e-18
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 84 2e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 80 5e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 71 3e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 66 7e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 7e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 63 6e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 60 4e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 2e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 5e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 55 1e-08
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 54 2e-08
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 4e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 49 8e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 1e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 3e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 5e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 40 7e-04
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.8
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 3.8
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 6.6
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 6.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 8.7
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 154 bits (374), Expect = 1e-38
Identities = 78/171 (45%), Positives = 113/171 (66%)
Frame = +3
Query: 213 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEA 392
+D K Q+ ++ + + N + + E ++ + + DPNSPL+SVK+FE
Sbjct: 59 VDAKSEQDKATNTIAEDANTKQSENDESNLIPNKNEVRVKLADLQADPNSPLFSVKSFEE 118
Query: 393 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 572
L LKP LLKG+Y+M F PSKIQE ALP LL++PP+NMI QSQSGTGKTAAF L MLSRV
Sbjct: 119 LELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV 178
Query: 573 DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS 725
D++ PQ +CL+P+ ELA Q +V +M K+ E+K + ++ + +P+G+
Sbjct: 179 DASVPKPQAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIK-DSVPKGA 227
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 86.6 bits (205), Expect = 4e-18
Identities = 41/95 (43%), Positives = 66/95 (69%)
Frame = +3
Query: 375 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 554
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+ +L + ++++AQ+QSGTGKTA F +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSI 75
Query: 555 AMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKM 659
++L ++D++ Q L L+PT ELA Q +V +
Sbjct: 76 SVLQKIDTSLKQCQALILAPTRELAQQIQKVVVAL 110
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 84.2 bits (199), Expect = 2e-17
Identities = 42/94 (44%), Positives = 63/94 (67%)
Frame = +3
Query: 384 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 563
FE +LK LL G++ GF PS IQE ++P L+ ++++A++++GTGKTAAFV+ L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSL 103
Query: 564 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAK 665
+VD+ K+ Q L L PT ELA+QT +V + K
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK 137
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 79.8 bits (188), Expect = 5e-16
Identities = 40/92 (43%), Positives = 60/92 (65%)
Frame = +3
Query: 372 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 551
+V +FE ++LK +LL+G+YA G+ PS +Q A+ + +++IAQ+QSGTGKTA F
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFS 76
Query: 552 LAMLSRVDSNKNYPQVLCLSPTYELAIQTGEV 647
+ +L +D + Q L LSPT ELA+Q V
Sbjct: 77 IGILQSIDLSVRDTQALILSPTRELAVQIQNV 108
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 70.5 bits (165), Expect = 3e-13
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Frame = +3
Query: 165 QKAEELEISNKVAGLGLD-KKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEI 341
Q ++E++ISN + +D NQ+ ++V + + D I L+ES
Sbjct: 5 QTSDEVDISNSLKAFPVDIATDNQKDKHENVGENVSDEDDG---NYIASKLLESNR--RT 59
Query: 342 QRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 521
+ K N F+++ L LL+ ++ GF AP+ IQ +P LL ++++ ++
Sbjct: 60 KGKKGNG---KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG--RDVVGMAR 114
Query: 522 SGTGKTAAFVLAMLSRVDSN--KNYPQVLCLSPTYELAIQTGEVAAKMAK 665
+G+GKTAAFV+ M+ + S + + L LSP ELA+QT +V +K
Sbjct: 115 TGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK 164
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 66.1 bits (154), Expect = 7e-12
Identities = 37/99 (37%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Frame = +3
Query: 381 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 560
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTAAF++ +
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 561 LSR-VDSNKNYP--QVLCLSPTYELAIQTGEVAAKMAKF 668
L R + K P +VL L PT ELA+Q VA K+A F
Sbjct: 318 LERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF 356
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.1 bits (154), Expect = 7e-12
Identities = 34/100 (34%), Positives = 56/100 (56%)
Frame = +3
Query: 384 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 563
F LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT--DVLCQAKSGMGKTAVFVLSTL 110
Query: 564 SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIK 683
+++ VL L T ELA Q A+ +K+ P+++
Sbjct: 111 QQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVR 150
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.9 bits (146), Expect = 6e-11
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Frame = +3
Query: 372 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 551
S KTF +L P L + ++ F P+ +Q +P LA ++++AQ+++G+GKTAA++
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP--LALEGKDLVAQARTGSGKTAAYL 69
Query: 552 LAML------SRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFC 671
+ +L ++D N+ L L PT ELA Q V K+ FC
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFC 115
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 60.1 bits (139), Expect = 4e-10
Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Frame = +3
Query: 231 QETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRK-DPNSPLYS-VKTFEALHLK 404
Q+ D + + AD + ++ + L D +Q+ + N+ S ++ F L L
Sbjct: 38 QDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLS 97
Query: 405 PNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK 584
N+ K + MGF ++IQ+ ++P LLA ++++ +++G+GKT AF++ + + + K
Sbjct: 98 ENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLIPTIEMLYALK 155
Query: 585 NYPQ----VLCLSPTYELAIQTGEVAAKMAKF 668
P+ V+ +SPT ELA+Q VA ++ K+
Sbjct: 156 FKPRNGTGVIIISPTRELALQIFGVAKELLKY 187
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.6 bits (133), Expect = 2e-09
Identities = 32/89 (35%), Positives = 53/89 (59%)
Frame = +3
Query: 378 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 557
KTF+ L + L + +GF P+ IQ+ A+P +L +++I +Q+G+GKTAAF L
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNK--RDVIGLAQTGSGKTAAFALP 103
Query: 558 MLSRVDSNKNYPQVLCLSPTYELAIQTGE 644
++ + +N + + L+PT ELA Q E
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQISE 132
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.4 bits (130), Expect = 5e-09
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Frame = +3
Query: 351 DPNSP--LYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQS 524
DP S L + F+ L + L +G+ + P+ IQ P LLA ++++ +++
Sbjct: 156 DPKSSENLLPILQFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAG--RDVVGIAET 211
Query: 525 GTGKTAAF---VLAMLSRVDSNKNYPQVLCLSPTYELAIQTGE 644
G+GKT AF L L+ + NK+ P+VL +SPT ELAIQT E
Sbjct: 212 GSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYE 254
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 55.2 bits (127), Expect = 1e-08
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Frame = +3
Query: 213 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKDPNSPLYSVKTFEA 392
L +K ++ D DDVP + MK +++ +I I+ D +PL + +E
Sbjct: 200 LQEKRAKKIDWDDVPWREKPLEA---MKPRDWRILKEDYNISIKGDDLPNPL---RNWEE 253
Query: 393 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 572
L +LK + + + PS IQ A+P LL +++I +++G+GKTAAF++ ++ +
Sbjct: 254 AGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQR--KDLIGIAETGSGKTAAFIIPLIIAI 311
Query: 573 -------DSNKNY-PQVLCLSPTYELAIQTGEVAAKMAK 665
+SN + P + L+PT ELA Q K A+
Sbjct: 312 SKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAE 350
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 54.4 bits (125), Expect = 2e-08
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Frame = +3
Query: 375 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 554
V TFE +LK V +GF AP+ IQ+ A P +A ++M+ S +G+GKT ++ L
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWP--MAMSGRDMVGISATGSGKTLSYCL 178
Query: 555 AMLSRVD-----SNKNYPQVLCLSPTYELAIQTGEVAAKMAK 665
+ ++ S + P VL L+PT ELA+Q + K K
Sbjct: 179 PAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK 220
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 53.6 bits (123), Expect = 4e-08
Identities = 35/107 (32%), Positives = 58/107 (54%)
Frame = +3
Query: 378 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 557
K+F L + P L+ + A+ P+ IQE + +L +N I +++G+GKTAAF L
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALP 64
Query: 558 MLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAV 698
++ + + + L L+PT ELAIQ E + A + LK+A+
Sbjct: 65 IIEKWSKDPSGIFALILTPTRELAIQIDE---QFAALGANLNLKHAL 108
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 49.2 bits (112), Expect = 8e-07
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Frame = +3
Query: 387 EALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLS 566
E L + GF + +Q+ L + + +N + Q+++GTGKT AF+L
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNE-ENAVVQAKTGTGKTLAFLLVAFK 99
Query: 567 RVDSNK---NYPQV--LCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSN 728
V K N ++ + LSPT ELA+Q E A K+ + I++ YA+ G R N
Sbjct: 100 DVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREEN 157
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/102 (26%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Frame = +3
Query: 381 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 560
+F+++++ L V A GF + +Q A+P L + ++++ ++ +G+GKT A++L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 561 LSRV---DSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPE 677
+V D+++ L ++PT ELA Q V ++ + P+
Sbjct: 60 FDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPD 101
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.0 bits (99), Expect = 3e-05
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Frame = +3
Query: 375 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 554
V F + L +LL+ + G+ P+ +Q+ ++P + + ++++A +Q+G+GKTA F+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLF 225
Query: 555 AMLS----------RVDSN--------KNYPQVLCLSPTYELAIQTGEVAAKMAKFC 671
+LS VD + K YP L L+PT EL Q E + KFC
Sbjct: 226 PILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE---ESRKFC 279
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 5e-05
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Frame = +3
Query: 276 DTSLLMKIIRQGLVESKL-DIEIQRKDPNSPLYSVKTFEALHLKPNLLKGVY-AMGFNAP 449
D+ + + Q L ++++ +I ++ N+P+ + F + L L + M +AP
Sbjct: 104 DSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTN-FAGVQLDTQLADHLNNKMNISAP 162
Query: 450 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR-VDSNKNYP------QVLCL 608
+ IQ LP LL ++ ++Q+G+GKT A++L ++ R + KN + +
Sbjct: 163 TAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIM 222
Query: 609 SPTYELAIQTGEVAAKM 659
+PT EL Q VA K+
Sbjct: 223 APTRELCQQIYNVANKL 239
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = +3
Query: 450 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK----NYPQVLCLSPT 617
++IQ+ +P+ L ++++ +++G+GKT AF++ ++ + K + L +SPT
Sbjct: 63 TEIQKQCIPSALKG--RDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPT 120
Query: 618 YELAIQTGEVAAKMAK 665
ELAIQT E K+ +
Sbjct: 121 RELAIQTFETLVKIGR 136
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 213 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIEIQRKD 353
+D+ + D +PDTP+A+ + + LVE + I+ KD
Sbjct: 865 VDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIKGLLKD 911
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 507 IAQSQSGTGKTAAFVLAMLSRVDSNKNYPQVLCLSPTYELAIQTGEVAAKMAKFCPEIKL 686
I + G GKT + +D N N P L ++P + E AKFCP++K+
Sbjct: 409 ILADEMGLGKTCQTIAFFSLLMDKNINGPH-LVIAPASTMENWLRE----FAKFCPKLKI 463
Query: 687 K 689
+
Sbjct: 464 E 464
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 583 LLESTLLNIAKTKAAVFPVPDCDW 512
++E +LLN A A FP DW
Sbjct: 290 MMEQSLLNFAYNSAGAFPWESLDW 313
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 372 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 509
S F A LK + + A N P+ ++ T + T+L P QN++
Sbjct: 357 SENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLL 402
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 432 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 578
+ + ++IQ P + +NM+ + +G GKT +LAML + +
Sbjct: 273 LSYQTLNRIQSLVYP-IAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,512
Number of Sequences: 5004
Number of extensions: 56175
Number of successful extensions: 208
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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