Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E07
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   4.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   4.6  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    26   8.1  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 131  IICASTLSSLFSALPERQPNKLL 199
            +ICA    +LFS LP+ Q  +LL
Sbjct: 2423 VICAKLYGALFSHLPDAQAKQLL 2445


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 56  FLNLNKVNTLSFSKMRRKFIII----LLGIICASTLSSLFS 166
           F N     T S S  ++K I +    L G+ICA  L+ LFS
Sbjct: 490 FTNETNTGTTSSSASKQKTIAVVGAGLTGLICARQLTGLFS 530


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 508 GVDHRSIVLVHADLVLGLFVGPVTK-YPDAYRSEIVIRDVHNIETA 374
           GVDH   + +HA  + G F  PV   Y +   +E + R+V + E A
Sbjct: 120 GVDHIITLDLHASQMQGFFTRPVDNLYAEPNIAEWIRRNVDDWEEA 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,969
Number of Sequences: 5004
Number of extensions: 69583
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)