Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E07
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81509-9|CAB04158.3|  503|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81463-12|CAB03855.3|  503|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z70271-5|CAA94233.2|  443|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF031477-1|AAC15586.1|  443|Caenorhabditis elegans delta6-fatty-...    29   3.3  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    29   5.7  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    29   5.7  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    29   5.7  

>Z81509-9|CAB04158.3|  503|Caenorhabditis elegans Hypothetical
           protein F21A3.7 protein.
          Length = 503

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 290 LSGDADLYVAYHMRPGYEVSENEYSSTTCGLDVVYIPDDYLRPIGVGIFGHWAYEQSEYK 469
           L  + D+ V Y  +  Y +  +  S + C LDV + P D ++   + +FG WA+     K
Sbjct: 56  LQSNNDVRVNYTGQVRYYIPFS--SESLCKLDVKFFPFD-VQQCSL-LFGSWAHSNDSIK 111

Query: 470 IRVYQDNTPVI 502
             +Y  N  +I
Sbjct: 112 YSLYSQNLSLI 122


>Z81463-12|CAB03855.3|  503|Caenorhabditis elegans Hypothetical
           protein F21A3.7 protein.
          Length = 503

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = +2

Query: 290 LSGDADLYVAYHMRPGYEVSENEYSSTTCGLDVVYIPDDYLRPIGVGIFGHWAYEQSEYK 469
           L  + D+ V Y  +  Y +  +  S + C LDV + P D ++   + +FG WA+     K
Sbjct: 56  LQSNNDVRVNYTGQVRYYIPFS--SESLCKLDVKFFPFD-VQQCSL-LFGSWAHSNDSIK 111

Query: 470 IRVYQDNTPVI 502
             +Y  N  +I
Sbjct: 112 YSLYSQNLSLI 122


>Z70271-5|CAA94233.2|  443|Caenorhabditis elegans Hypothetical
           protein W08D2.4 protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/62 (19%), Positives = 32/62 (51%)
 Frame = -3

Query: 673 KHKIH*RIQYIQEWNDESRFVFIFSSAIMVPPFAXSIAFWVLVGFVGGLLPCHHPGVDHR 494
           ++K++ R  + ++      + ++F    ++P +   +A++++    GGLL  H    +H 
Sbjct: 282 EYKVYQRNAFWEQATIVGHWAWVFYQLFLLPTWPLRVAYFIISQMGGGLLIAHVVTFNHN 341

Query: 493 SI 488
           S+
Sbjct: 342 SV 343


>AF031477-1|AAC15586.1|  443|Caenorhabditis elegans
           delta6-fatty-acid-desaturase protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/62 (19%), Positives = 32/62 (51%)
 Frame = -3

Query: 673 KHKIH*RIQYIQEWNDESRFVFIFSSAIMVPPFAXSIAFWVLVGFVGGLLPCHHPGVDHR 494
           ++K++ R  + ++      + ++F    ++P +   +A++++    GGLL  H    +H 
Sbjct: 282 EYKVYQRNAFWEQATIVGHWAWVFYQLFLLPTWPLRVAYFIISQMGGGLLIAHVVTFNHN 341

Query: 493 SI 488
           S+
Sbjct: 342 SV 343


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 TTCGLDVVYIPDDYLRPIGVGIFGHWAYEQSEYKIRVYQ 484
           ++C +DV + P D    +   +FG W Y ++E K+   Q
Sbjct: 153 SSCIIDVEFFPFD--EQVCTLVFGSWTYNENEIKLEFVQ 189


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 TTCGLDVVYIPDDYLRPIGVGIFGHWAYEQSEYKIRVYQ 484
           ++C +DV + P D    +   +FG W Y ++E K+   Q
Sbjct: 153 SSCIIDVEFFPFD--EQVCTLVFGSWTYNENEIKLEFVQ 189


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 368 TTCGLDVVYIPDDYLRPIGVGIFGHWAYEQSEYKIRVYQ 484
           ++C +DV + P D    +   +FG W Y ++E K+   Q
Sbjct: 153 SSCIIDVEFFPFD--EQVCTLVFGSWTYNENEIKLEFVQ 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,097,283
Number of Sequences: 27780
Number of extensions: 402681
Number of successful extensions: 1026
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)