Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E06
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.025
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.66 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.66 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.77 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 346 PPXPPPXKXXPXGGGXXSPPPPP 414
           PP PPP       G    PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 870 PGXGXGGXXXPPXPPPPP 817
           P  G  G   PP PPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 349 PXPPPXKXXPXGGGXXSPPPPP 414
           P PPP    P  GG   PPPPP
Sbjct: 750 PVPPPA---PIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 681 PPPPPPPP 704
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect(3) = 0.025
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 684 PPPPPPPP 707
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 860 GXGGXXXPPPPXPPP 816
           G  G   PPPP PPP
Sbjct: 769 GVAGAGPPPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 334 LXXXPPXPPPXKXXPXGGGXXSPPPPP 414
           L   PP PPP    P       P PPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 23.4 bits (48), Expect(3) = 0.025
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 822 GXGGXGXXXPPPPP 863
           G  G G   PPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782



 Score = 21.0 bits (42), Expect(3) = 0.025
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 681 PPPPPP 698
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 867 GXGXGGXXXPPXPPPPP 817
           G    G   PP PPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 866 GGGXGGXXXPPPPXPPP 816
           G    G   PPPP PPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 840 PPXPPPPPP 814
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 840 PPXPPPPPP 814
           PP PPPPPP
Sbjct: 945 PPPPPPPPP 953


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 0.77
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 681 PPPPPPP 701
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 0.77
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 683 PPPPPPP 703
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 0.77
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 684 PPPPPPP 704
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 0.77
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 686 PPPPPPP 706
           PPPPPPP
Sbjct: 337 PPPPPPP 343


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 815 GGGGGGXGGXXXPPXPXPG 871
           GGG GG GG    P P PG
Sbjct: 187 GGGFGGFGGGSGGPPPGPG 205



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 413 GGGGGXXXPPPXGXFFXG-GGXGG 345
           G GGG   PPP    F G GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGG 215


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 355  PPPXKXXPXGGGXXSPPPPP 414
            PPP    P   G  S PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 346 PPXPPPXKXXPXGGGXXSPPPPP 414
           PP  PP    P G    S PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 681 PPPPPPPP 704
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683 PPPPPPPP 706
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 23.4 bits (48), Expect(2) = 5.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 840 PPXPPPPP 817
           PP PPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 21.0 bits (42), Expect(2) = 5.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 831 PPPPPP 814
           PPPPPP
Sbjct: 25  PPPPPP 30


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 681  PPPPPPPP 704
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683  PPPPPPPP 706
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 681 PPPPPPPP 704
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683 PPPPPPPP 706
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.152    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,797,288
Number of Sequences: 5004
Number of extensions: 20300
Number of successful extensions: 438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)