Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E06
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.30 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 681  PPPPPPPP 704
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 683  PPPPPPPP 706
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 840  PPXPPPPP 817
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 837  PXPPPPPP 814
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 855 GGXXXPPXPPPPPP 814
           G    PP P PPPP
Sbjct: 333 GDSDTPPKPAPPPP 346



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 330 PPFXXPPXPPPXKKXP 377
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 837 PXPPPPPP 814
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 681 PPPPPPPP 704
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 683 PPPPPPPP 706
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 681 PPPPPPPPP 707
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 837  PXPPPPPP 814
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 681  PPPPPPPP 704
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 684  PPPPPPPP 707
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 376  PXGGGXXSPPPPP 414
            P  G    PPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.152    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,806
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)