Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E05
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    33   0.044
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    29   1.3  
SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    27   2.9  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   5.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   8.9  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   8.9  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 640 NLDKTKATKIVDNTKNVTKT*NVSSENTSVNAGI*RYISSMTSRFPLGFAISAF 479
           NLD+ K     DN  + +   ++SS NTS+ +    ++S    RF L F I AF
Sbjct: 323 NLDEFKPADGADNEDSKSLVSHISSSNTSLFSNFTFFLSREVPRFSLEFVIRAF 376


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 572  HILCFCYVFCVVYNFGCLCFVQVHYHKTC 658
            H + +  +  +V N GCL F   HY   C
Sbjct: 1115 HAIAYAVLHHLVSNIGCLGFFSTHYQSLC 1143


>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 235 NPNCSVKTEVLCDRSEPTVEITLLPAIAATA-KIQKVTLRSENLTCLEILQLLNKHISSL 411
           N NC   T +L    EP    T  PA++ +A  +    L        +IL  L   ++S 
Sbjct: 90  NENCVGITAMLGISVEPLTNFTETPAVSTSASNVIAKPLPPVTSVAQKILTNLYNFLASF 149

Query: 412 APVELPP 432
           A  +LPP
Sbjct: 150 ATSQLPP 156


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 109 QLKAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTE 261
           +L  ++L  A  IT+K +P   +A  T +F  ++S P   I + N + K E
Sbjct: 700 KLCKLDLAKANSITLKSEP--SSAVSTHSFEVHLSMPGTQIKSANLAEKME 748


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 532 IVKYQHLLMYSQKTHFMFLLRFLCCLQFWLPLF 630
           ++ ++H+ +Y    +F++LLR  C    + P F
Sbjct: 185 LICFKHIFLYVAPAYFVYLLRVYCFTPNFRPQF 217


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 264 HFGLHRAIGICDCYFRCTDVMSKI 193
           HF     I IC CY+R  D  S I
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLI 608


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 86  PLDLLIVPLYGIDIQILRIPYS 21
           P+ LL++ L+ +D   LRIPYS
Sbjct: 895 PIPLLLLQLFLVDDNGLRIPYS 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,342
Number of Sequences: 5004
Number of extensions: 54271
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)