Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E05
         (944 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723...    24   7.5  
11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333     28   9.4  

>07_01_0871 -
           7230228-7230338,7231055-7231348,7231972-7232148,
           7232513-7232551,7232734-7234057,7238145-7238189,
           7238456-7238498,7238680-7238716,7239035-7239325,
           7239634-7239685,7239690-7239773,7240064-7240137,
           7240703-7241641
          Length = 1169

 Score = 24.2 bits (50), Expect(2) = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -3

Query: 231 DCYFRCTDVMSKIPCVS-CVFSK 166
           DCY    DV  K+PC S C+  K
Sbjct: 375 DCYGYIVDVGRKVPCSSGCICYK 397



 Score = 22.6 bits (46), Expect(2) = 7.5
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 327 CSCCNCRQECYFY 289
           C CC+   +CY Y
Sbjct: 367 CKCCSVAGDCYGY 379


>11_08_0029 - 27783907-27784310,27784418-27786616,27786751-27787333
          Length = 1061

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 358 NLTCLEILQLLNKHISSLAPVEL 426
           NLT LEIL L   HIS   P EL
Sbjct: 155 NLTKLEILNLYGNHISGHIPAEL 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,816
Number of Sequences: 37544
Number of extensions: 306602
Number of successful extensions: 870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)