Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E05
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    61   1e-09
Z22177-9|CAE18052.1|  110|Caenorhabditis elegans Hypothetical pr...    47   2e-05
U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulat...    29   3.7  
AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/94 (35%), Positives = 49/94 (52%)
 Frame = +1

Query: 115 KAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTEVLCDRSEPTVE 294
           +A+NL+  K I I  DP   +    R F H I APK+ +TNPN  VKT++  DR  P   
Sbjct: 25  RALNLQKVKSIDISLDPLHHDNLSIRTFWHSIMAPKVRLTNPNVRVKTDIRNDRRAPFFV 84

Query: 295 ITLLPAIAATAKIQKVTLRSENLTCLEILQLLNK 396
            TL          QK+   +EN+T ++++   N+
Sbjct: 85  ATLDDG-------QKLHFSTENMTAMDVIMNFNR 111


>Z22177-9|CAE18052.1|  110|Caenorhabditis elegans Hypothetical
           protein ZK512.11 protein.
          Length = 110

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/73 (27%), Positives = 40/73 (54%)
 Frame = +3

Query: 480 KAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRFITIKPV 659
           K +  K +  LDV+ ++ + +P F ++F E+TFYVF    VL  ++   V+++   +K  
Sbjct: 16  KRKNGKTRLMLDVVHQMNQAVPTFNELFDEETFYVFAFLVVLVAVIFVIVMAKCFNVKIK 75

Query: 660 E*IVTFKLKYNDL 698
           E  +    ++ D+
Sbjct: 76  EYDIDIDREWRDM 88


>U52072-1|AAD11465.1|   97|Caenorhabditis elegans dauer-upregulated
           protein 191 protein.
          Length = 97

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 506 SFRFCHLCFYFVFVFFLS 453
           SF FC+ CF  +FVFF S
Sbjct: 51  SFFFCYFCFVILFVFFSS 68


>AF100662-1|AAC68977.1|  900|Caenorhabditis elegans Hypothetical
           protein H34C03.2 protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 70  IRRSKGVVSAIGKQLKAVNL-KAAKKITIKFDPFG 171
           +R    +V  +  QLK+  +    +KI+IKFDPFG
Sbjct: 415 MRNDSIIVDTLHGQLKSTLICPVCEKISIKFDPFG 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,411
Number of Sequences: 27780
Number of extensions: 323823
Number of successful extensions: 1014
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)