Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E05
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   2.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +3

Query: 462 EDKNKIKAEMAKPKGNLDVIEEIYRQIPAFTDVFSEDTFYVFVTFFVLSTILVAFVLSRF 641
           E+K K K +   P  N+ V  ++   + A  D+F  DT Y + T   L+  +V + +  F
Sbjct: 465 EEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIF--DT-YTYDTICQLN--IVHYGIG-F 518

Query: 642 ITIKPVE*IVTFK 680
           IT   +E   TFK
Sbjct: 519 ITQSDIELANTFK 531


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -1

Query: 182 VAFSPNGSNFMVIFLAAFKLTAFSCFPMAETTPLDLLIVPL 60
           V + P   N+         LT ++ FP+ E + +   ++P+
Sbjct: 185 VEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPM 225


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 647 GNEPGQNKGNQNCRQHKKRNKN 582
           GN+   NK N N +   KRN N
Sbjct: 497 GNKQNDNKQNGNRQNDNKRNGN 518


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 529 YIVKYQHLLMYSQKTHF-MFLLRFLCCLQFWLP 624
           YI+  +  L Y+        L+ FLC L F+LP
Sbjct: 226 YIIIRRKTLFYTVNLILPTVLISFLCVLVFYLP 258


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 168 KWIKFYGNFFSSL 130
           KW+  +GNF  SL
Sbjct: 574 KWLDIHGNFIESL 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,835
Number of Sequences: 438
Number of extensions: 3575
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)