Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E04
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240... 33 0.23
05_03_0163 + 9070781-9071320 31 1.6
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 30 2.8
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 30 2.8
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 29 4.9
05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155 29 4.9
04_04_1050 + 30419673-30419789,30419882-30419977,30420180-304202... 29 4.9
07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521 29 6.5
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 29 6.5
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584... 29 6.5
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 28 8.6
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758 28 8.6
>06_01_0333 +
2404459-2404857,2404917-2405009,2405428-2405522,
2406146-2406219,2406307-2406395,2406745-2406858
Length = 287
Score = 33.5 bits (73), Expect = 0.23
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -3
Query: 187 PSPPLLLRFVLPRCRPASSPDLVHSRRPAAALT 89
PSPPL L LP P P L+ S RPAAALT
Sbjct: 4 PSPPLFLS--LPSPPPPPLPHLLPSHRPAAALT 34
>05_03_0163 + 9070781-9071320
Length = 179
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 84 GHVRAAAGLREWTRSGEDAGRHRGRTKRS-NNGGDGQTARLALPRVRIPDPG 236
G R A G W++ E G GR++R+ GG G +R R R P+PG
Sbjct: 12 GQSRGAGG---WSQRAEGWGGGGGRSQRAEGGGGGGGRSRRGTGRGRWPEPG 60
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +3
Query: 78 CFGHVRAAAGLREWTRSGEDAGRHRGRTKRSNNGGDGQTARLALPRVRIPDPGNLLV 248
C A+G EW+ +G +G R + GGDG LALPR+++PD + LV
Sbjct: 2794 CLDGFEPASG-GEWS-AGRFSGGCRRKEAPPCGGGDGF---LALPRMKVPDKFSTLV 2845
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 99 AAGLREWTRSGEDAGRHRGRTKRSNNGGDGQTARLALPRV 218
AA LR S DAG G R GG G A A+PR+
Sbjct: 30 AAMLRRMVVSDTDAGGGGGEAGRVRGGGGGGAALFAVPRL 69
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 276 WHHGTVKSSVPEDFRGRVSVHEAAQDERSAHLPRYYFV 163
WHH + + ++ GR+ + AA ++ + + PR Y++
Sbjct: 238 WHHAVMSFDLNKESFGRIQLPTAALEDSAFYGPRRYWI 275
>05_01_0238 - 1783742-1783780,1783838-1783936,1784033-1784155
Length = 86
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 187 PSPPLLLRFVLPRCRPASSPDLVHSRRPAAAL 92
PSPP LLR +LP +SS L RRP +L
Sbjct: 4 PSPPCLLRVLLP-VASSSSRGLRRRRRPTTSL 34
>04_04_1050 +
30419673-30419789,30419882-30419977,30420180-30420264,
30420352-30420386,30420479-30420544,30420646-30420686,
30420818-30420933,30421101-30421207,30421354-30421491,
30421610-30421744,30421888-30421998
Length = 348
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 317 RRTFSLASYNVLLYGTMGPLSPLYQKISGVGYPYTRQR 204
R T S Y V L T+ LS L QKI+ Y Y +Q+
Sbjct: 303 RETVSRTDYEVDLITTLTKLSSLGQKINYEAYTYPKQK 340
>07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521
Length = 191
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 244 RRFPGSGIRTRGSARRAVCPSPPLLLRFVLPRCRPASSPD 125
RR PGSG +A R + P P+L R R P+S PD
Sbjct: 104 RRRPGSG--AAAAATRPLLPILPMLARGDRERALPSSRPD 141
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 93 RAAAGLREWTRSGEDAGRHRGRTKRSNNGGDGQTARLALPRVR 221
R A R TRSG H + R +G DG + PRVR
Sbjct: 433 REDASPRVPTRSGGHGHHHHHHSSRPRSGSDGARSGYPSPRVR 475
>04_01_0450 -
5840015-5840055,5840635-5840977,5841326-5841537,
5842381-5842477
Length = 230
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 123 RSGE-DAGRHRGRTKRSNNGGD 185
RSGE DAGR GR RS GGD
Sbjct: 3 RSGEGDAGRGDGRRLRSGQGGD 24
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -2
Query: 275 GTMGPLSPLYQKISGVGYPYTRQRKTSGLPISPVITSFCSPAMPTGVLT 129
G P + L K G PY RK G P + P PT V+T
Sbjct: 422 GLKSPAAGLAAKFPVSGSPYVAPRKKGGGADVPGLAEAAHPMPPTSVMT 470
>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
Length = 415
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -2
Query: 263 PLSPLYQKISGVGYPYTRQRKTSGLPISPVITSFCSPAMP-TGVLTGSCPLAQASSSPNV 87
P+SP + + G P + + T G P + + + P T SC +A S SP +
Sbjct: 219 PISPRFAAAAAAGVPISPRTPTPGSPYNKHAAAAATARPPHPAAATSSCSVAY-SMSPAM 277
Query: 86 TET 78
T T
Sbjct: 278 TPT 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,120,461
Number of Sequences: 37544
Number of extensions: 578005
Number of successful extensions: 2152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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