Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E03
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.70 
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    27   2.8  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    27   3.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   6.5  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.5  
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      26   8.6  

>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 113 NNHQKVATYNEFLFHLNISLKNLSKPFSEHKNH 211
           +NH  +  YNE   H +ISL+NL      H +H
Sbjct: 546 HNHDHIHKYNEKCDHESISLQNLDNDHHCHHHH 578


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 367 AVMNVVPIYTRRTKDACPSCRTVLEENVET 456
           +++N    Y+  T   CP CR  +E+ +ET
Sbjct: 364 SLLNFAKFYSTNTCHTCPVCRDGVEDVIET 393


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 414 RIFSSSSI-YWNDVHDCPVF 358
           R+ +SS I  WN++HDC +F
Sbjct: 103 RVLTSSLIKLWNEIHDCVLF 122


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query: 174 KIFQNLSRNIKTM----ENGFYVI--NIQIVLD*LSVFSAVNLRSFINFYPIKTEVVYLN 335
           ++   LS  IKT     EN F ++  N  ++LD L+  S      F +  P+  +++  +
Sbjct: 187 QVINGLSEIIKTAAMWNENDFQLLENNSAVLLDALNKPSVPGEYKFDSIKPLLQKIILSS 246

Query: 336 VKGNCEYKKQGSHE 377
           ++  CE      HE
Sbjct: 247 IRTKCEVVTLDEHE 260


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  LNLFLNSINNHQKVATYNEFLFHLNISLKNLSKPFSEHKN 208
           ++L L  + +   V  Y+    ++N  L+     FSEHKN
Sbjct: 518 IDLLLGRLIDQHPVILYDPIHEYVNHELRKRENEFSEHKN 557


>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 176 NLSKPFSE-HKNHGKWLLCN*HSNSIGLIKRFF 271
           N  K FSE HKNHGK    N H   I +I+  F
Sbjct: 51  NTFKDFSEKHKNHGKKSGLNPHDWWIKVIEHSF 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,250
Number of Sequences: 5004
Number of extensions: 54940
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)