Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_E03
         (919 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    29   4.7  
AC006692-8|AAF39973.1|  431|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    29   6.2  
Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/70 (27%), Positives = 25/70 (35%)
 Frame = +1

Query: 364 RAVMNVVPIYTRRTKDACPSCRTVLEENVETEIAIESHXXXXXXXXXXXXXXXXXXYVSS 543
           R V+   PI T    D CP C+T +  +V T I +                         
Sbjct: 20  RHVVKETPIKTPYL-DVCPKCQTTIMTSVTTHIGMCWWLICFFGTFLFCWPILICLCFDV 78

Query: 544 CKHIDHYCPN 573
            K +DH CPN
Sbjct: 79  SKDVDHNCPN 88


>AC006692-8|AAF39973.1|  431|Caenorhabditis elegans Hypothetical
           protein T28F12.1 protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 95  LFLNSINNHQKVATYNEFLFHLNISLKNLSKPFSEHKNHGKW 220
           +F   +  HQ +A    F+F +  +  + S+   EH+N G+W
Sbjct: 37  IFCKKLKKHQTLAAIGLFIFLMTFTFVSNSQASGEHQN-GRW 77


>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +3

Query: 261 SVFSAVNLRSFINFYPIKTEVVYLNVKGNCEYKKQGSHERRSNIY*KN*RCVSVMPYSLR 440
           SV   V  +  ++F  IK  V   +     EY     +++++ +Y +  RC +   +++ 
Sbjct: 195 SVHQVVLNKLTLHFEIIKCSVCTYDKNLELEY-----YDKKTKLYAETVRCETTEKFAIV 249

Query: 441 RKCRNRNCY*ISSYCYST 494
           R  +N N + +S+YC  T
Sbjct: 250 RSAKNENIF-LSTYCPKT 266


>Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 261 SVFSAVNLRSFINFYPIKTEVVYLNVKGNCEY 356
           S FS  ++R+  NF+P+  + +YLNV  N EY
Sbjct: 79  SCFSNSSMRTDSNFFPMSEDCLYLNVFTN-EY 109


>Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 261 SVFSAVNLRSFINFYPIKTEVVYLNVKGNCEY 356
           S FS  ++R+  NF+P+  + +YLNV  N EY
Sbjct: 79  SCFSNSSMRTDSNFFPMSEDCLYLNVFTN-EY 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,328
Number of Sequences: 27780
Number of extensions: 298011
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)