Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_E02
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.90
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 28 1.6
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 28 1.6
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 27 2.8
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 2.8
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 2.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 6.4
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 6.4
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 26 6.4
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 8.4
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.90
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +2
Query: 251 EGYSPEKKESDNKAVLERLQSYLKDKKNTEVSDTSAGYSKPSTSYDPTTNTI-PNIEDSS 427
E ++ D VLE S ++KKN E DT + T T+ P D+
Sbjct: 245 EAMEEDEVAEDEDVVLETSISQEEEKKNIENPDTEVTFISADTKKVTEIPTVHPREIDAF 304
Query: 428 NILREVLNYKKAELLRQPDVTDFLKAITKD 517
+ RE+ Y ++ Q +A++ D
Sbjct: 305 WLQREIAKYFADAVVCQEKTNQAFEALSAD 334
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 278 SDNKAVLERLQSYLKDKK--NTEVSDTSAGYSKPSTSYDPTTNTIPNIEDSSNILREVLN 451
S+ LE+ +SYL + ++++ D G YD T + I +++ I+ EVL
Sbjct: 2 SERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLK 61
Query: 452 YKKAE 466
+E
Sbjct: 62 QLDSE 66
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/99 (23%), Positives = 45/99 (45%)
Frame = +2
Query: 227 SYR*AMSREGYSPEKKESDNKAVLERLQSYLKDKKNTEVSDTSAGYSKPSTSYDPTTNTI 406
S + A R+ +E++ + L + L+ ++T++ T+A S +S + NT
Sbjct: 73 SQKHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKI--TTAEKSSVQSSLNTKENTP 130
Query: 407 PNIEDSSNILREVLNYKKAELLRQPDVTDFLKAITKDLK 523
+ S N +E L +KAE+ + + + DLK
Sbjct: 131 QQPKKSRNRQKERLERRKAEMKKMSEQAELESEKMADLK 169
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 2.8
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 305 LQSYLKDKKNTEVS-DTSAGYSKPSTSYDPTTNTIPNIEDSSNILREVLNYKKAELLRQP 481
L LKDK + + G PS YDP +NT + SS +++V ++ L++
Sbjct: 506 LTDTLKDKDGNDFKFEPPTGAGLPSKGYDPGSNTY--VAPSSVNVKDVAIDPHSKRLQR- 562
Query: 482 DVTDFLKAITKDLK 523
+T F K KD+K
Sbjct: 563 -LTPFKKWDGKDMK 575
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 383 SSYLVCCTRRSCRKLQCFSCLSNKTVIAL 297
S +L+ C RR+ R+L C C + A+
Sbjct: 23 SKFLILCMRRNKRQLACMKCQCENPMAAI 51
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 326 KKNTEVSDTSAGYSKPSTSYDPTTNTIPNIEDSSNILREVLNYKKAEL 469
K+ E S + G P T YD ++I +I ++ R+ LN KK L
Sbjct: 5 KREHESSSSQDGSKTPETEYDSHVDSIEDIHSLAS-KRKKLNEKKENL 51
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +2
Query: 239 AMSREGYSPEKKESDNKAVLERLQSYLKDKKNTEVSDTSAGYS--KPSTSYDPTTNTIPN 412
A S G +P S K + S DK T S G+S KP+T+ D T PN
Sbjct: 258 AASNTGSAPTTGFSFGKPA-GQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPTAPN 316
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 392 SDRSSYLVCCTRRSCR--KLQCFSCLSNKTVIALKQPCCHFLSF 267
+++++Y C R+ R LQC CL+ + L PC + F
Sbjct: 37 NEQNTYCYCGKDRNLRFPDLQCSVCLNMFHLSCLSPPCTSMMGF 80
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 335 TEVSDTSAGYSKPSTSYDPTTNTIPNIEDSSNILREVLNYKKAELLRQPDVTDFLK 502
+++S T+A S TTNT N + N L LN + + L +V FLK
Sbjct: 110 SQISSTNASVETQVNSVQ-TTNTTSNTSKAPNGLDSELNERLSTLTNAHNVMLFLK 164
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +2
Query: 320 KDKKNTEVSDTSAGYSKPSTSYDPTTNTIPNI---EDSSNILREVLNYKKAELLRQPDVT 490
KD + E+S S KP T PTT P ED + + L + E + P V
Sbjct: 573 KDGRLKEISQFSKTTIKPETPLTPTTTPTPRTAAQEDPAEETTDALASAEGENNQMPQVL 632
Query: 491 D 493
+
Sbjct: 633 E 633
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,511
Number of Sequences: 5004
Number of extensions: 51009
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -