Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D24
         (992 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   6.4  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 331 GGPXPXGXAPXGXPPPXSXPF 269
           GGP   G  P G P P   P+
Sbjct: 66  GGPPSGGQPPQGMPYPRFPPY 86



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/58 (25%), Positives = 16/58 (27%)
 Frame = +2

Query: 236 GAPGGXGPXXXKXXGXGGGXPXGGXAXGGGAPGXPPXXGXRGGXXXXSXPPPXXGGXP 409
           G      P   +  G     P GG A         P  G R G        P  GG P
Sbjct: 17  GVVSAEHPHQHQHYGAAVQVPQGGGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGGQP 74


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = -2

Query: 361 PPXAXXXGXPGGPXPXGXAPXGXPPPXSXPFXXP 260
           PP         G  P   +P G P P S P   P
Sbjct: 52  PPPLADAAVGKGFHPWKKSPQGAPSPSSTPSSLP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.161    0.581 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,762
Number of Sequences: 336
Number of extensions: 3026
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28237209
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)