Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_D24
(992 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.047
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.33
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.58
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 28 1.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.047
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 883 PPPXPXRXXXXXXPPXXGGXGAPXXPPPXXPPPXXXXG 770
PPP P PP G GA PPP PP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 30.3 bits (65), Expect = 0.44
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 361 PPXAXXXGXPGGPXPXGXAPXGXPPPXSXP 272
PP G P P P G A G PPP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 136 PRXPPXPXGXAGXXXXPXXXPGPPPGGXXRGXPR 237
P PP P G AG P P PPP G R
Sbjct: 761 PPPPPPPPGVAGAGPPP---PPPPPPAVSAGGSR 791
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Frame = -2
Query: 901 PPXGXAPPPXPXRXXXXXXPPXXGGXGAPXXPP------PXXPPP 785
PP P P P P GG P PP P PPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/65 (33%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Frame = -2
Query: 958 PPPXAXPXRXXXXXRRXGGPPXGXA--------PPPXPXRXXXXXXPPXXGGXGAPXXPP 803
PPP P R R G PP G PPP P P G AP PP
Sbjct: 311 PPPPPPPSR-----RNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 802 PXXPP 788
P P
Sbjct: 366 PRSAP 370
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = -2
Query: 883 PPPXPXRXXXXXXPPXXGGXGAPXXPPPXXPPP 785
PPP P P G + PP PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 136 PRXPPXPXGXAGXXXXPXXXPGPPP 210
P PP P G P P PPP
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.33
Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Frame = -2
Query: 973 GXPXAPPPXAXPXRXXXXXRRXGGPPXGXAP---PPXPXRXXXXXXPPXXGGXGAPXXPP 803
G P APPP P G P AP PP P + P P P
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP-KPSVAAPPVPKPSVAVPPVPA 1116
Query: 802 PXXPPP 785
P PP
Sbjct: 1117 PSGAPP 1122
Score = 29.9 bits (64), Expect = 0.58
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = -2
Query: 967 PXAPPPXAXPXRXXXXXRRXGGPPXGXAPPPXPXRXXXXXXPPXXGGXGAPXXPPPXXPP 788
P PP P + G P APPP P P GAP P P P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAP--SAPPPVP--APSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 787 P 785
P
Sbjct: 1093 P 1093
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = -2
Query: 973 GXPXAPPPXAXPXRXXXXXRRXGGPPXGXAPPPXPXRXXXXXXPPXXGGXGAPXXPPPXX 794
G P P P P A PP P P G P PPP
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA-GVPPVPPPSE 1196
Query: 793 PPP 785
PP
Sbjct: 1197 APP 1199
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -2
Query: 361 PPXAXXXGXPGGPXPXGXAPXGXPPPXSXPFXXPGAPXPXXP 236
P A G P P P P PP + P P P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -2
Query: 361 PPXAXXXGXPGGPXPXGXAPXGXPPPXSXPFXXPGAPXPXXP 236
PP G P P P AP P + P P P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -2
Query: 361 PPXAXXXGXPGGPXPXGXAPXGXPPPXSXPFXXPGAPXPXXP 236
PP G P P P AP P + P P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 25.8 bits (54), Expect = 9.5
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -2
Query: 361 PPXAXXXGXPGGPXPXGXAPXGXPPPXSXPFXXPGAPXPXXP 236
PP P P P P PP + P P A P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.9 bits (64), Expect = 0.58
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 236 GAPGGXGPXXXKXXGXGGGXPXGGXAXGGGAPGXPPXXGXRGG 364
G+ GG G G GGG G A GGG G G RGG
Sbjct: 13 GSRGGRGGFNGGRGGFGGGR---GGARGGGRGGARGGRGGRGG 52
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Frame = +2
Query: 236 GAPGGXGPXXXKXXGXGGGXPXGGXAXGGGAPGXPPXX-GXRGG 364
G GG G G G G GG GGA G G RGG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = -2
Query: 961 APPPX-AXPXRXXXXXRRXGGPPXGXAPPPXPXRXXXXXXPPXXGGXGAP 815
APPP A P R PP APPP P R P G +P
Sbjct: 8 APPPRRAAPARSASTAAAL--PPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Frame = +3
Query: 786 GGGXXG-GGXXGAPXPPXXGGXXXXXXRXGXG---GGAXPXGGPPXRRXXXXXRXGXAXG 953
GGG G GG G P PP GG G G GG GG P G G
Sbjct: 187 GGGFGGFGGGSGGP-PPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245
Query: 954 GGAXG 968
G G
Sbjct: 246 GFGGG 250
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +2
Query: 236 GAPGGXGPXXXKXXGXGGGXPXGGXAXGGGAPGXPPXXGXRGG 364
G PGG G GG G GGG G G GG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Frame = +2
Query: 236 GAPGGXGPXXXKXXGXGG----GXPXGGXAXGGGAPGXPPXXGXRGGXXXXSXPPPXXGG 403
G GG P G GG G GG GG PG G GG P GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG-----GFEGGPGGFGGGPGGFGG 249
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = -2
Query: 946 AXPXRXXXXXRRXGGPPXGXAPPPXPXRXXXXXXPPXXGGXGAPXXPPPXXPPP 785
A P + PP AP P P PP P PP PPP
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTPPP---PPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +1
Query: 571 PPPXXAAPRXXXXXXXXXGPPXGPPXP 651
PPP + P GPP PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.5
Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 8/66 (12%)
Frame = -2
Query: 958 PPPXAXPXRXXXXXRRXGGPPXGXAPPPXPXRXXXXXXP--PXXGGXGAPXXP------P 803
PP A P PP PP P P P AP P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 802 PXXPPP 785
P PPP
Sbjct: 199 PKVPPP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.161 0.581
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,537
Number of Sequences: 5004
Number of extensions: 26576
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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