Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D24
         (992 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.80 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.80
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 363 PPRXPXXGGXPGAPP 319
           P + P  GG PGAPP
Sbjct: 42  PSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = -2

Query: 898 PXGXAPPPXPXRXXXXXXPPXXGGXGAPXXPPPXXPP 788
           P   AP P P        P           PPP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 184 PXXXPGPPPGGXXRGXP 234
           P    GPPPGG     P
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 131 PGPAXPXPPXXXRGP 175
           P PA P PP    GP
Sbjct: 339 PKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.161    0.581 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,098
Number of Sequences: 438
Number of extensions: 5844
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32895408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)