Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D22
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    26   8.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   8.1  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   8.1  

>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 848 RYCFKQYCEFYQVFFK 801
           R+CFKQ  E+Y ++ K
Sbjct: 545 RFCFKQLLEYYDIYLK 560


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 538 REGNRSSSVTVVLVAHSAGLDLRAVSDRGVGGELDN 431
           REG      T+VLV    G +L+A    G GG  ++
Sbjct: 311 REGFAEFLGTLVLVVFGVGSNLQATVTNGAGGSFES 346


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 146 WRCSKQAIASSATNVTVNRIRTA 214
           W+C K  + +S+TNV ++ +R A
Sbjct: 176 WKCIKSNLNTSSTNVLLSALRCA 198


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 172 IKCYQCNSEQDKNCGDPFKSAKPPXRMQHPGFD*LQYALPAQHSACRSLEQRYGS 336
           +K  Q N +++K   + F   K P      GFD +QY  P ++    S   +  S
Sbjct: 230 LKMAQVNCDEEKEMCNHFHIKKFPTFRVFQGFDSIQYNGPLKYQQLLSYSNQVAS 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,575
Number of Sequences: 5004
Number of extensions: 67689
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)