Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D22
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    35   0.074
03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325     31   1.6  
01_05_0397 + 21753095-21753814                                         29   3.7  
11_06_0271 - 21804629-21805836,21805997-21806015                       29   4.9  
05_05_0142 - 22673607-22674134                                         29   4.9  
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    28   8.5  

>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -3

Query: 475 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSRSSRNAVQDFDRQN 299
           +R + D GVG E++   G   I+G+  +Q STD+S+++ +++  + R   +  Q      
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449

Query: 298 VAQVERIEVNRILGVAF 248
           V    R++V R  G  +
Sbjct: 450 VK--GRLKVTRAFGAGY 464


>03_05_1116 + 30522573-30523112,30523201-30523353,30524053-30524325
          Length = 321

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 110 WQKV*HSPSLFYWRCSKQAIASSATNVTVNRIRTAGTRSRA 232
           WQ   +   +FYWRC+    A+    V  + +RT+G   RA
Sbjct: 176 WQFEQNDQRVFYWRCAVYKSAAEEVTVWGSPLRTSGLLPRA 216


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 392 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 502
           +D N + ++H    +++  +TA +DS  V SC VC +
Sbjct: 8   VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44


>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 413 SQHTCRVVELASNTAIADSAKVKSCAVCNKDNCNGAGSISFSLPLATFALIATYF 577
           S   C V  ++S T       ++S  VC     +G+  I+F       A+++TYF
Sbjct: 183 SDSMCIVAAISSRTLALWHPGMRSWCVCRSFGIDGSADIAFYQGRIYMAMVSTYF 237


>05_05_0142 - 22673607-22674134
          Length = 175

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 333 PVTLFKTSTGRMLRR*SVLKLIESWVLHSXWGFGALERVPAVLI 202
           PV+    S GR  RR S ++L  SW+  S W  G   R+ A+++
Sbjct: 45  PVSWIPVS-GRSGRRWSTVQLSASWIPTSSWEVGDAARMTALMV 87


>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 240  PX*NATPRIRLTSIRSTCATFCLSKS*TALRELLDTVTRSS*RAELLSVLAWMST 404
            P     P+ RL S+R     F L +S T+  ++  +   SS +   +  L WM T
Sbjct: 1032 PGHGTIPQSRLHSVREELLQFLLEESKTSSTDVYKSFKSSSEKCPNICYLLWMDT 1086


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,429,149
Number of Sequences: 37544
Number of extensions: 423613
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)