Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_D21
(949 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 6.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.9
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.9
Identities = 25/90 (27%), Positives = 27/90 (30%)
Frame = -2
Query: 732 GGGGAXLXXKXXXXXGGPFXXGVWGXLXGGPXXXKKXFFXXGXSPXXFWGENXXXPPXWG 553
GGG GP G +G GG G P F G P +G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGF-GGEGHHHGGHGGFGGGPGGFEG----GPGGFG 241
Query: 552 GXXKXXXXXPQXXXGAXGVFXGGEXGXGGP 463
G G G F GG G GGP
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 234 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 260 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 644 PPXRXPQTPXKKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPP 772
PP P + PP PPPP + PPPP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 722 PPPPXGGXXXKKXPPPP 772
PPPP G + PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPP 28
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 722 PPPPXGGXXXKKXPPPP 772
PPPP G PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPP 27
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 8.9
Identities = 21/86 (24%), Positives = 23/86 (26%)
Frame = +2
Query: 674 KKGPPXFXXXFXXXXAPPPPXGGXXXKKXPPPPXXRXXXXXXXXRF*KXTRGXPXPXKTP 853
KK PP PP G PPPP R P P P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP-PPPPP 366
Query: 854 PXXPPFFXXPPXXXKXKKXSPLXSPP 931
P PP + S +PP
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPP 392
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -3
Query: 602 PPXXFGGKTXXXPPXGGGXXNPLPPXPKXP 513
P GG PP G P PP P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,147
Number of Sequences: 5004
Number of extensions: 23463
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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