Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_D19
(934 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.044
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.10
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.54
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 8.7
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.5 bits (73), Expect = 0.044
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPP 599
P PP PP P P P AP P P S P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 519 PPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
PP P P P P P P PP S P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.10
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPX-PXKSPPXXRSXXRXXP 629
P++ R PP PP P P P P P P KSPP S P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXP---GXTPXKPXXPKAPXXPXPXKSPPXXRS 611
P+A R P P PP P P P AP P P +PP +S
Sbjct: 1004 PAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKS 1055
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/59 (27%), Positives = 18/59 (30%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P PS P P P G P AP P P +PP + P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXPN 638
P PS P P P G P KAP P P P + P P+
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPH 1260
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPK----APXXPXPXKSPPXXRSXXRXXPX 632
PS P G PP P + P PK P P P +PP + P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 633 P 635
P
Sbjct: 1134 P 1134
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/64 (25%), Positives = 17/64 (26%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXPN 638
P PS P P P P P +AP P P P P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221
Query: 639 XXQG 650
G
Sbjct: 1222 PSAG 1225
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/57 (28%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PXPPXXXXGXPPXP---GXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
P P PP P G P AP P P +PP + P P G
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/59 (25%), Positives = 17/59 (28%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P PS+ P P PP P P P P +PP P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.54
Identities = 19/73 (26%), Positives = 24/73 (32%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXPNXX 644
P P PP PP P P P P A P P +P P
Sbjct: 440 PMGAPAAPPLPPSAPIA-PPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQ-Q 497
Query: 645 QGRDNVRXAXRST 683
GR N+ + R++
Sbjct: 498 DGRANLMASIRAS 510
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 310 TCLLQLIMXTN*AIASQISXIKHFFH 233
+CL+ L TN I ++ KHFFH
Sbjct: 765 SCLICLETYTNGDICRKLQACKHFFH 790
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,156
Number of Sequences: 5004
Number of extensions: 20704
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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