Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_D19
(934 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.13
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.13
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.39
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.39
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.39
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.67
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.67
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.67
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 4.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.3
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.3
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.3
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.3
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 8.3
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 8.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P P P PP PP PG TP P P P P P + P P P
Sbjct: 287 PPPPPSSGMWPPPP------PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPP 599
P P P PP PP PG TP P P + P P PP
Sbjct: 262 PVPPPPPSVTPMPPPM----PPTPGMTPRPPPPPSSGMWPPPPPPPP 304
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/59 (32%), Positives = 20/59 (33%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P P P PP PP PG TP P P P P P + P P P
Sbjct: 297 PPPPPSSGMWPPPP------PPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPP 599
P P P PP PP PG TP P P + P P PP
Sbjct: 272 PVPPPPPSVTPMPPPM----PPTPGMTPRPPPPPSSGMWPPPPPPPP 314
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPP 599
P PP PP G +P P P P P SPP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 308
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P A P PP PP G P P +P P SPP R+ P P
Sbjct: 248 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG--SPPPPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPP 599
P PP PP G +P P P P P SPP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 329
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P A P PP PP G P P +P P SPP R+ P P
Sbjct: 269 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG--SPPPPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.39
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPP 599
P PP PP G +P P P P P SPP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPP 314
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P A P PP PP G P P +P P SPP R+ P P
Sbjct: 254 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG--SPPPPPAGGSPPPPRAGSPPPPPP 308
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P PP G PP G P P P P P P + P P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKP---XXPKAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
P PP G PP G P P P P P PP P P +G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P PP G PP G P P P P P P + P P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKP---XXPKAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
P PP G PP G P P P P P PP P P +G
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P PP G PP G P P P P P P + P P
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGXTPXKP---XXPKAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
P PP G PP G P P P P P PP P P +G
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +3
Query: 465 PSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXP 635
P A P P G P P P P AP P P P + P P
Sbjct: 85 PPAPLPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVP 141
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/76 (25%), Positives = 22/76 (28%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXPN 638
P P PP G +P P P+ P P P PP R P P
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPP--RRPPMTPPSPQ 168
Query: 639 XXQGRDNVRXAXRSTP 686
R R+ P
Sbjct: 169 RRPPRTPPSPEPRNPP 184
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +3
Query: 495 PPXXXXGXPPXPGXTPXKPXXPKAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
PP PP PG P P P P + P P P QG
Sbjct: 699 PPMFNLNAPPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQG 750
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Frame = +3
Query: 459 PXPSAXXXRXPXPPXXXXGXPPXP---GXTPXKPXXPKAPXXPXP 584
P P P PP G PP P G P P AP P P
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 519 PPXPGXTPXKPXXPKAPXXPXPXKSP 596
PP PG +P KP P P P +P
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNP 131
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 519 PPXPGXTPXKPXXPKAPXXPXPXKSP 596
PP PG +P KP P P P +P
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNP 131
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 519 PPXPGXTPXKPXXPKAPXXPXPXKSP 596
PP PG +P KP P P P +P
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNP 131
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 519 PPXPGXTPXKPXXPKAPXXPXPXKSP 596
PP PG +P KP P P P +P
Sbjct: 106 PPGPGGSPGKPGKPGKPGAPGAPGNP 131
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGX--TPXKPXXP-KAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
P P G P PG P +P P K P P +PP + + P P G
Sbjct: 108 PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Frame = +3
Query: 489 PXPPXXXXGXPPXPGX--TPXKPXXP-KAPXXPXPXKSPPXXRSXXRXXPXPNXXQG 650
P P G P PG P +P P K P P +PP + + P P G
Sbjct: 108 PPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,369,963
Number of Sequences: 27780
Number of extensions: 150257
Number of successful extensions: 750
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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