Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D18
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    32   0.53 
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89...    31   1.6  

>11_01_0110 +
           850780-850805,851465-851537,851558-851720,851947-852260,
           852330-852409,852506-852848,853068-853166,853240-853360,
           853567-853723,853976-854099,855275-855368,855866-857259,
           857882-857924,858240-858458,859379-859605,859701-859948,
           860246-860552,860725-861153
          Length = 1486

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +1

Query: 307 DVCVPRLSSDALAKCLX*STTAKWIENKNHNPQEQRPTKFTIVYSKQNRSETY 465
           D  VPR +++ +A+ +      + I+N  H PQE+RP +F  V  +   S T+
Sbjct: 415 DRLVPRWNTERVARAIP-GAGFEVIKNSGHLPQEERPEEFVSVVERTAVSVTF 466


>12_01_0117 +
           893924-893971,894944-895003,895024-895174,895410-895884,
           895974-896316,896347-896391,896533-896631,896708-896828,
           897032-897255
          Length = 521

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 307 DVCVPRLSSDALAKCLX*STTAKWIENKNHNPQEQRPTKFTIVYSK 444
           D  VPR +++ +A+ +      + I+N  H PQE+RP +F  V  +
Sbjct: 456 DRLVPRWNTERVARAIP-GAGFEVIKNSGHLPQEERPEEFVSVVER 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,207,625
Number of Sequences: 37544
Number of extensions: 327062
Number of successful extensions: 704
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)