Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D15
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.45 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    26   0.45 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   3.1  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 796 HACNKPFKCARLDSFTCVS 740
           HA +KPF+C + D +TCV+
Sbjct: 253 HAGSKPFQCNKCD-YTCVN 270


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 796 HACNKPFKCARLDSFTCVS 740
           HA +KPF+C + D +TCV+
Sbjct: 11  HAGSKPFQCNKCD-YTCVN 28


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 584 AGTYGKPSIGPKEAEKNVRNFSE 652
           AGTYG    GP   E  V  ++E
Sbjct: 280 AGTYGGSDAGPYTREMGVIGYNE 302


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 568 VTGQKGWNLREAVNRTER 621
           V+ QK W L   +N TER
Sbjct: 268 VSKQKRWELARNLNLTER 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,756
Number of Sequences: 336
Number of extensions: 4617
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)