Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_D15
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 77 4e-15
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 53 5e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 41 3e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.017
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 30 0.38
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 2.0
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 28 2.0
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.5
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 76.6 bits (180), Expect = 4e-15
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Frame = +2
Query: 353 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 529
L+ G +LC++ I+ S+M F MENI+AF+ A+Q+ VP+Q+ FQT DL+
Sbjct: 31 LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89
Query: 530 ERQNLNSVVICLQSLGRKAGTY--GK-PSIGPKEAEKNVRNFSEEQLRA-GQGVISLQYG 697
ER+N V+ + S R A GK +GPK AEK R FS +Q R +GV SLQYG
Sbjct: 90 ERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQYG 149
Query: 698 S 700
S
Sbjct: 150 S 150
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 53.2 bits (122), Expect = 5e-08
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +2
Query: 317 TPQGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGV 493
T G F + L++G +L L P+ +IK ++ + F+ +NIN FL+ +G+
Sbjct: 57 TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGL 116
Query: 494 PAQETFQTVDLWERQNLNSVVICLQSL 574
P F+ D++E +NL V+ C+ +L
Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 329 DMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQE 505
++D+F + L +G +LC+LA +P + ++ + +NAF +G+
Sbjct: 84 NLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPF 143
Query: 506 TFQTVDLWERQNLNSVVICLQSL 574
F+T DL R N+ V+ CL +L
Sbjct: 144 RFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 34.7 bits (76), Expect = 0.017
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Frame = +2
Query: 341 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 490
F++ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +2
Query: 338 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 490
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/89 (21%), Positives = 35/89 (39%)
Frame = +2
Query: 410 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSLGRKAG 589
++ +S A E + AF+E A+Q G+P E W+ + + +L +
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLR 177
Query: 590 TYGKPSIGPKEAEKNVRNFSEEQLRAGQG 676
Y + +NVR + G+G
Sbjct: 178 YYIINKLNSDPCWRNVRFILSDASVPGEG 206
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 466 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGQKGWNLR 597
P+ + V CTG G+ V +S D L +TG+ G L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 811 LRSI*HACNKPFKCARLDSFTCVSCY 734
LRS ACN K R DSF C C+
Sbjct: 55 LRSSSVACNTCLKIIRNDSFHCTKCF 80
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +2
Query: 353 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 529
LK+ T + L+++IHPN +++ S +N+ N E + L + + VD +
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57
Query: 530 ERQNLNSVVICLQSLGRKAGTYGKPSIGPKEAEKNVRN 643
E+ L + I +++ TY K S+G +N N
Sbjct: 58 EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,573
Number of Sequences: 5004
Number of extensions: 75917
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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