Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_D14
(952 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.015
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.1 bits (77), Expect = 0.015
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPPP 464
PPPPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPPP 464
PPPPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPPP 464
PPPPPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.015
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPPP 464
PPPPPPPP PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 31.5 bits (68), Expect = 0.18
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPPP 464
PPPPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = -1
Query: 583 PPPPPXXXXHXXXXXXXXXXXPPPPPPPPXXXXXXXPPPP 464
P P P PPPPPP PPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 583 PPPPPXXXXHXXXXXXXXXXXPPPPPPPP 497
PPPPP PPPPPPPP
Sbjct: 761 PPPPPPPPG------VAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -1
Query: 583 PPPPPXXXXHXXXXXXXXXXXPPPPPPPPXXXXXXXPPPP 464
PPPPP PPPPPP PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 29.5 bits (63), Expect = 0.73
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Frame = -1
Query: 583 PPPPPXXXXHXXXXXXXXXXX---PPPPPPPPXXXXXXXPPPP 464
PPPPP PPPPPPP P PP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Frame = -3
Query: 584 PPPPXPXXXXXXXFXXXXXXXX-PPPPPPPXXXXXXXXPPP 465
PPPP P PPPPPP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 3.9
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = -1
Query: 580 PPPPXXXXHXXXXXXXXXXXPPPPPPPPXXXXXXXPP 470
PP P PPPPPPP PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Frame = -1
Query: 583 PPPPPXXXXHXXXXXXXXXXXPPPPP-PPPXXXXXXXPP--PP 464
PP PP P PPP PPP PP PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPPPXXXNFFFFF 437
PPPPPPPP P + F+
Sbjct: 370 PPPPPPPPELLNHSPKSRPLGDKPYLFY 397
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 520 PPPPPPPP 497
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 520 PPPPPPPPXXXXXXXPPP 467
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 517 PPPPPPPXXXXXXXPPPP 464
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,764
Number of Sequences: 5004
Number of extensions: 23248
Number of successful extensions: 294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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