Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D13
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family...    29   3.5  
Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta f...    29   6.1  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 435 HQVSSSVAPSDARAPERSVPAQYYARVQQNSL 530
           HQV   +AP+   AP  +VP  Y     QNSL
Sbjct: 849 HQVVRPIAPTPTIAPNSNVPVSYQISQSQNSL 880


>U88315-15|AAB42365.1|  351|Caenorhabditis elegans Annexin family
           protein 4 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 278 RRTATVISVVR*SVRFESDVKSCIRRNILIMSSVRLSFVSVGRLAVRRNPQI 433
           +   TV+  V  + +   D++S IRRN  I S +RL  +++ R  V RN QI
Sbjct: 216 KHIGTVLDKVDEARKDVQDIESIIRRNKNIHSEIRLILLTIAR--VSRNIQI 265


>Z73905-2|CAA98109.3|  529|Caenorhabditis elegans Hypothetical
           protein C32C4.1 protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -1

Query: 315 DQRTTEITVAVRRVTIFVFICQ*EVFVMTQHFQSTSTLLF*TEII*NISTKTSLLCFLFN 136
           + R  E T A+  V +   +    VF + ++  STS   F   +  +I+  + L  FL  
Sbjct: 349 ESRLKEFTGAMLVVRVLRVLRMARVFKLARY--STSLQTFGHTLQSSITELSMLSMFLIT 406

Query: 135 --VIRKTIFYYLFKRAGHTDVHS 73
             V   TI YYL K   HTD +S
Sbjct: 407 GIVFFSTIMYYLEKDEPHTDFYS 429


>U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta
           family protein 6 protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 432 ICGFLLTASLPTDTKLNLTLLIIKMFLLMQLLTSDSNRTDQRTTEI 295
           +C  LL   +P + K+ LTL I+ +     LLT + N  ++  T +
Sbjct: 247 VCS-LLEKGMPAEKKVGLTLTIMTVLRSNGLLTVNDNNDEEEVTRV 291


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
 Frame = +2

Query: 380 RLSFVSVGRLAVRRNPQITSGVQQCRSLRRTCTRALGTCTVLCKSPTEQXXXXXXSNSGK 559
           RLS  S    +   NP + S  +   + R++    L  C+V+ +SP+        + + +
Sbjct: 180 RLSTSSEASTSATMNPIVNSVRRLSTTHRQSSPSLLSLCSVISRSPSTSSILRKNNRTCQ 239

Query: 560 DAAASGH----IGLAKVWATVATGVLTC-PEMXEXP 652
            +  SGH    IG   V   V TG     P M + P
Sbjct: 240 FSNGSGHLPIFIGGKTVQVPVPTGYENMDPTMDQDP 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,574,186
Number of Sequences: 27780
Number of extensions: 322562
Number of successful extensions: 742
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)