Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D12
         (945 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3Q026 Cluster: Putative uncharacterized protein precur...    34   4.6  
UniRef50_A2DFC2 Cluster: Formin Homology 2 Domain containing pro...    34   4.6  

>UniRef50_A3Q026 Cluster: Putative uncharacterized protein
           precursor; n=3; Mycobacterium|Rep: Putative
           uncharacterized protein precursor - Mycobacterium sp.
           (strain JLS)
          Length = 210

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 799 LXXPGXXPPLXPPPXGXPLXXPPPG 873
           L  P    PL PPP G PL  PPPG
Sbjct: 167 LPPPPPGAPLPPPPPGAPLPPPPPG 191



 Score = 34.3 bits (75), Expect = 4.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 799 LXXPGXXPPLXPPPXGXPLXXPPPG 873
           L  P    PL PPP G PL  PPPG
Sbjct: 176 LPPPPPGAPLPPPPPGAPLPPPPPG 200


>UniRef50_A2DFC2 Cluster: Formin Homology 2 Domain containing
           protein; n=2; Eukaryota|Rep: Formin Homology 2 Domain
           containing protein - Trichomonas vaginalis G3
          Length = 1189

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 808 PGXXPPLXPPPXGXPLXXPPPG 873
           PG  PP  PPP G P   PPPG
Sbjct: 665 PGLVPPPPPPPGGVPPPPPPPG 686



 Score = 34.3 bits (75), Expect = 4.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 808 PGXXPPLXPPPXGXPLXXPPPG 873
           PG  PP  PPP G P   PPPG
Sbjct: 675 PGGVPPPPPPPGGVPPPPPPPG 696


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,748,699
Number of Sequences: 1657284
Number of extensions: 5999207
Number of successful extensions: 30764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28092
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 86957532651
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)