Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D12
         (945 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    30   2.3  
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    29   4.1  
02_04_0534 + 23725051-23726253                                         28   9.4  

>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 808  PGXXPPLXPP--PXGXPLXXPPPGX*XXNL 891
            PG  PP  PP  P G P   PPPG    NL
Sbjct: 926  PGAPPPPPPPGKPGGPPPPPPPPGSLPRNL 955


>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 808 PGXXPPLXPPPXGXPLXXPPPGX*XXNLXXFXPFXGGG 921
           PG  PP  PP    PL  P P     +     PF GGG
Sbjct: 266 PGHAPPQLPP-GASPLFPPGPAAFHPSSRPMPPFPGGG 302


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 796 FLXXPGXXPPLXPPPXGXPLXXPPP 870
           FL   G  PPL PPP       PPP
Sbjct: 50  FLRAIGALPPLAPPPAAPLAPAPPP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,947,205
Number of Sequences: 37544
Number of extensions: 275296
Number of successful extensions: 2341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)