Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D12
         (945 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    32   0.52 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    32   0.52 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    32   0.52 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   8.5  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -1

Query: 630 PGGNPXNLGEKXQNPPPXXGXKTLPPPPXKXGXXG 526
           PGG P   G     PPP  G    PPPP   G  G
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 811 GXXPPLXPPPXGXPLXXPPP 870
           G  PP  PPP G P   PPP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPP 775


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -1

Query: 630 PGGNPXNLGEKXQNPPPXXGXKTLPPPPXKXGXXG 526
           PGG P   G     PPP  G    PPPP   G  G
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 811 GXXPPLXPPPXGXPLXXPPP 870
           G  PP  PPP G P   PPP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPP 775


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -1

Query: 630 PGGNPXNLGEKXQNPPPXXGXKTLPPPPXKXGXXG 526
           PGG P   G     PPP  G    PPPP   G  G
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 811 GXXPPLXPPPXGXPLXXPPP 870
           G  PP  PPP G P   PPP
Sbjct: 339 GGPPPPPPPPGGCPPPPPPP 358


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 820 PPLXPPPXGXPLXXPPP 870
           PP+ PPP   P+  PPP
Sbjct: 68  PPICPPPPPPPMPCPPP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,440,059
Number of Sequences: 27780
Number of extensions: 162092
Number of successful extensions: 962
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)