Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D08
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK131073-1|BAC85123.1|  659|Homo sapiens FLJ00259 protein protein.     31   7.6  
AK125658-1|BAC86235.1|  309|Homo sapiens protein ( Homo sapiens ...    31   7.6  
AF109907-3|AAC97963.1| 1235|Homo sapiens hypothetical protein pr...    31   7.6  

>AK131073-1|BAC85123.1|  659|Homo sapiens FLJ00259 protein protein.
          Length = 659

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 216 HVSKRGQ--SRGRATSLDAAGRRIRAQRDPSQHVGAGRVARRXPW 88
           H  +R Q  + GR+T  D  G     +++PSQH   G   +R PW
Sbjct: 190 HGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQH-RTGAAVQRKPW 233


>AK125658-1|BAC86235.1|  309|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43670 fis, clone SYNOV4007521. ).
          Length = 309

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 216 HVSKRGQ--SRGRATSLDAAGRRIRAQRDPSQHVGAGRVARRXPW 88
           H  +R Q  + GR+T  D  G     +++PSQH   G   +R PW
Sbjct: 9   HGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQH-RTGAAVQRKPW 52


>AF109907-3|AAC97963.1| 1235|Homo sapiens hypothetical protein
           protein.
          Length = 1235

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 216 HVSKRGQ--SRGRATSLDAAGRRIRAQRDPSQHVGAGRVARRXPW 88
           H  +R Q  + GR+T  D  G     +++PSQH   G   +R PW
Sbjct: 747 HGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQH-RTGAAVQRKPW 790


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,594,457
Number of Sequences: 237096
Number of extensions: 1789310
Number of successful extensions: 10683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10683
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)