Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D04
         (930 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    50   8e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.091
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.28 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.48 

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 50.0 bits (114), Expect = 8e-05
 Identities = 24/35 (68%), Positives = 25/35 (71%)
 Frame = +1

Query: 595 CINESANARGEAVCVLGALPLPRSLTRCARSXGCG 699
           CI + A AR EAV VL ALPL RS TRC RS GCG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 22/43 (51%), Positives = 25/43 (58%)
 Frame = +1

Query: 619 RGEAVCVLGALPLPRSLTRCARSXGCGERYXPXTGSPQXAXNT 747
           R   +C  G +PLPRSLTR ARS GCGERY    G      +T
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTDGDGNFLEDT 68


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.091
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -2

Query: 665 ERGSGRAPNTQTASPRALADSLMQ 594
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.28
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 593 SALMNRPTXGERRFAYW 643
           +ALMNRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +2

Query: 398 DPDMIRYIDXXGQTTTXMQ 454
           DPDMIRYID  GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,612,595
Number of Sequences: 1657284
Number of extensions: 8355698
Number of successful extensions: 15070
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15067
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85670899699
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)