Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D03
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    33   0.074
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   2.1  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   2.8  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    27   3.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   8.5  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   8.5  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   8.5  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   8.5  

>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 32.7 bits (71), Expect = 0.074
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 629 IWCIFIKILKRYCSLSIVNAVFIFFCECIYF 537
           IW +   I++ YC+  I N    F C+C Y+
Sbjct: 58  IWTLLSAIVRFYCAYHITNPDVYFLCQCTYY 88


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 348  SDVNEMNKQNIIWTKNSTIMLLN-LYETKIHMLDNP-KKKSKMWISIAEELKSLN--VEV 515
            +++ + N Q        T+ ++N  +E   H++++    + +   S+  EL  LN  VEV
Sbjct: 962  AELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREEKITSLRSELLDLNKRVEV 1021

Query: 516  TADQVRWKINALTKKYKDCIDNGQGAVSFK 605
              ++       L K+ +D +     A+SFK
Sbjct: 1022 LKEEKESSSKELAKQLEDAVREKDSALSFK 1051


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 445 SNICILVSYKFSNIIVEFFVQMIFCLFISFTS 350
           +N+  + SYK    I+   + M FCLF+S ++
Sbjct: 515 NNLLFMNSYKMKLSIILGVIHMTFCLFLSLSN 546


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 312 YNHNQNISQQEESDVNEMNKQNI 380
           YN + ++   EES+V+  NKQN+
Sbjct: 495 YNSSTSLDSSEESEVDVENKQNV 517


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 261 ILDSQPNLYKPNMPVPTYNHNQNISQQEESDVNEM 365
           +L S PN Y P +P P  +H+  ++  E+S ++ +
Sbjct: 220 LLKSYPNAYVPRLP-PKDDHDTYLNSSEDSTLSPL 253


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -1

Query: 356 YIRFFLLANVLIVIVCWNWHIWFVQIRLTIE 264
           Y+ FF   ++ + +    W++W ++  LT+E
Sbjct: 247 YVGFFTFLSIGLSVCLELWYLWDIKTGLTVE 277


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 305 NWHIWFVQIRLTIENS*DRYIVMNVFIHFDLDINLIRPF 189
           N H+ F  +   I     R + MNV I FD   N I+PF
Sbjct: 235 NTHVRFPTLTANIRQRRGRKVAMNVPIFFDK--NTIKPF 271


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 550 SQKNIKTALTMDKEQYLLSILMKMHQILGRYNDNGGNYRL 669
           SQ  +KTA  + + +   S + K     G +  NGGN  L
Sbjct: 8   SQLGLKTAFNLSQNKTYTSAVKKQFFSTGAFLSNGGNIDL 47


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 667 LASGVIQEDAEKSKDRKNLMKTTTPF*KIKG 759
           LAS ++  + +KSK    L++ T PF  I G
Sbjct: 680 LASVILNRNVDKSKIDPKLIRKTLPFQNING 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,321
Number of Sequences: 5004
Number of extensions: 65909
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)