Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D02
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.6  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 577 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCRLPD 678
           + + K D ++ IPGV  +      S  DPC  PD
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCPPPD 314


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 665 QGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYGK 525
           QG+  +SAR S+ G+  GI  +L   + S    DF +    G G +G+
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFGE 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,581
Number of Sequences: 5004
Number of extensions: 64136
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)