Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_D02
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    28   0.14 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           28   0.14 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.56 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.2  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 739 TYSVSYEKAPRF--PKGERRXRYPVSGRGRNRRAHEG 635
           T+  + E APR   P G  +  Y +SG G+   A+EG
Sbjct: 14  TFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEG 50


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 739 TYSVSYEKAPRF--PKGERRXRYPVSGRGRNRRAHEG 635
           T+  + E APR   P G  +  Y +SG G+   A+EG
Sbjct: 14  TFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEG 50


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 472 SHVLSCVIPLILWITVLPPLSELIPLAA 389
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 493 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 395
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 639 SCALLFRPLPLTGYLXRLSPFGKR 710
           +C L   P PLTG    L  F KR
Sbjct: 218 ACPLNPNPQPLTGQQELLQDFSKR 241


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 472 SHVLSCVIPLILWITVLPPLSELIPL 395
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,669
Number of Sequences: 438
Number of extensions: 5350
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)