Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP02_F_C22
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 33 0.072
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 31 0.17
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 29 0.67
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 29 0.67
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.89
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.89
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 27 2.7
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 2.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 4.8
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.8
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 27 4.8
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 6.3
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 26 6.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 6.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 8.3
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 8.3
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 8.3
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 32.7 bits (71), Expect = 0.072
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 508 VAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTD-EKSD--EDKMNVDEPVDSPEK 666
V+ KK K K+KQ KKK T D +D EK + E N+D+ +D EK
Sbjct: 90 VSTNKKAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKLEGLESSKNIDDDIDEIEK 145
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 523 KQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVD 675
+++L S K KQI S+ + N + D +DED++ + VD + +++
Sbjct: 48 EKELESVKTKQISSSASSKVSSNTIQELDSTTDEDEIPGSDTVDEEDPSLN 98
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 29.5 bits (63), Expect = 0.67
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 496 KLVDVAWKKKQKL-NSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNV 672
K +D + +++ L SAK + KN+ PK D + K D + ++DE V EKNV
Sbjct: 39 KEIDENYHRQESLIESAKIAYLNTKNTP--PKEDSMLPNLKKDSEDFDMDEFVKELEKNV 96
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 517 KKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPE 663
KK +K+ K+K+ KKK+ K ++ + +K ++ K + + D PE
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKI-KLKDKPE 237
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 0.89
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Frame = +1
Query: 496 KLVDVAWKKKQKLNSAKRKQI----KKKNSTDLPKNDQNDT-----DEKSDEDKMNVDEP 648
++VD + K + N +R+Q KK D+ + N+T D++ D D+ +E
Sbjct: 316 RMVDFCFSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEI 375
Query: 649 VDSPEKNV 672
V++ EKN+
Sbjct: 376 VNAREKNL 383
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.89
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Frame = +1
Query: 496 KLVDVAWKKKQKLNSAKRKQI----KKKNSTDLPKNDQNDT-----DEKSDEDKMNVDEP 648
++VD + K + N +R+Q KK D+ + N+T D++ D D+ +E
Sbjct: 316 RMVDFCFSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEI 375
Query: 649 VDSPEKNV 672
V++ EKN+
Sbjct: 376 VNAREKNL 383
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 520 KKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPV 651
K QK S +Q+K+ +TD KN++ E +++D + P+
Sbjct: 125 KTQKSESPIPQQVKRDGTTD-AKNEETTKPENNEKDDFEEEPPL 167
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 523 KQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVD 675
K+K NS R +NS D N +T+E+ DE M + E NV+
Sbjct: 582 KEKKNSKSRVVGNTENSKDEFNNPLFETEEQIDESWMENWNDEEETENNVE 632
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 526 QKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKN 669
++ + +++ +KNST P D + + S K +D P+ PE N
Sbjct: 696 EETDDTSQEEDNEKNST--PDEDTENNNTSSISTKSIMDRPLTEPEPN 741
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 517 KKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVD 642
K + NS+ + + N+T N +DT++ S ED V+
Sbjct: 48 KVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGEDSYQVE 89
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 499 LVDVAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVD----SPEK 666
L+DV +++QK + Q+ K+N + + D K E+K+ +E E+
Sbjct: 57 LIDVPKEERQKRKQELKDQLLKENEGSISSKKKKRLD-KYIENKLKKEEVASLIAKLAEE 115
Query: 667 NVDMTILSTTR 699
+D ++LS+++
Sbjct: 116 RIDTSLLSSSK 126
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 514 WKKKQKLNSAKRKQIKKKNST-DLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVDMTILS 690
W + K K N+T ++ N+++D+D+ + DK+ + V S ++ L
Sbjct: 82 WSFNASKSGKSNKDHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVGSSIDENELVDLD 141
Query: 691 T 693
T
Sbjct: 142 T 142
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 296 SLKGRRACFSFFFD 255
+LK +R CFSFFF+
Sbjct: 18 TLKNKRKCFSFFFE 31
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 496 KLVDVAWKKKQKLNSAKRKQIKKKNSTDLPKNDQNDTDEKSDE 624
K++DV K+K+ LNS KQ STD KN + + DE
Sbjct: 957 KMLDVVPKEKRDLNSFFPKQPLVVQSTD--KNKKEPQESLEDE 997
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 556 IKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDS 657
+K K + PKN +ND+ K++ + + P S
Sbjct: 602 VKAKKTRRAPKNSENDSATKTETANITSEAPTTS 635
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +1
Query: 535 NSAKRKQIKKKNSTDLPKND-QNDTDE------KSDEDKMNVDEPVDSPEKNVDMTI 684
NS + ++ D P ND + D E ++DED + D+ VDS KN +++I
Sbjct: 80 NSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSI 136
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 565 KNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNV 672
K TD+ + + DE +E + ++P+ S E+N+
Sbjct: 753 KAMTDMGSDSEQSADENDNESMASEEKPMFSDEENL 788
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,736
Number of Sequences: 5004
Number of extensions: 43439
Number of successful extensions: 227
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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