Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C21
         (1028 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   5.7  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   7.5  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    26   7.5  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   7.5  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   7.5  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 438  NKNDINTMSYLCTKSKVFNEVREFRGVL 355
            NK D ++M  LC  +KV   VR+  GVL
Sbjct: 1026 NKEDASSMKGLCCFAKVERIVRQTNGVL 1053


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 185 IEIPATAAHQDESGVRIN-DSIVSDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRT 361
           +++P++AA    SG R    SI +D  S +  ++     ++  G P  D +P  S A   
Sbjct: 138 LQVPSSAA----SGARTQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAPAASPASSE 193

Query: 362 PR 367
           PR
Sbjct: 194 PR 195


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 452 SFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAMLFI 574
           +F P+++  N+F P F     + IW   ++  N  NA+ F+
Sbjct: 20  TFLPVSSAGNVFTPRFQLQAIRSIWIRSEETPN-ENALKFL 59


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/63 (19%), Positives = 29/63 (46%)
 Frame = -2

Query: 688 IXXITLDEXTXTHXXQIXTTLALGNVNNIFKSVGHHTIYE*HCICSV*IVFRWKPYDFCH 509
           +  +T D+   ++  ++  T+    +  +     H T+ +   +C   + F  +P DFC 
Sbjct: 352 VPELTADDTAESYLSKLRETVPYSRMIPVLAEKDHVTLNKALHLCMSGMEFENRPLDFCL 411

Query: 508 RVY 500
           R++
Sbjct: 412 RLF 414


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 503 YSVTKIIWFPPKDNSNTTNAML 568
           Y VTK++W P    SNT + +L
Sbjct: 108 YPVTKLLWNPSSVGSNTDSQLL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,545
Number of Sequences: 5004
Number of extensions: 51607
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)