Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C21
         (1028 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    30   2.3  
U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical p...    30   3.1  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
 Frame = +2

Query: 86   LENSQSRLQFLTGKSADSCARGSPVRTVDSS-----QDIEIPATAAHQDESGVRINDSIV 250
            +  S S    +T  S+++   GS  +T  SS         IP+T      SG  I+D   
Sbjct: 1316 VSGSNSSGSTVTIGSSEASTSGSSFKTSPSSISPVPTSSPIPSTTFASSTSGSTISDVSS 1375

Query: 251  SDHTSQEPLTIFGPETAAGDGEPVDDPSPFPSRAQRTPRNSRTS 382
               TS  PL+   P T     +     S   S+A  +P  S+TS
Sbjct: 1376 VSTTSLAPLSSSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTS 1419


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 444 ICNKNDINTMSYLCTKSKVFNEVRE--FRGVLCARDGKGEGSSTGSPS 307
           +C K  IN +   C    V NE+     R   C+R G G GSST  PS
Sbjct: 61  MCTKQCINNVCQ-CRSGYVRNEITRQCVRQAQCSRPGTGFGSSTPFPS 107


>U80029-13|AAB37592.2|  429|Caenorhabditis elegans Hypothetical
           protein T20D4.5 protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +2

Query: 386 KTLLLVHKYDMVLMSFLLQIYYSFNPLTNTTNLFLPIFIYSVTKIIWFPPKDNSNTTNAM 565
           KTL L H  D V M+ ++     F       +  +   I    K + FP   +SNTT + 
Sbjct: 194 KTLALDHNIDYVTMNIIIHKPIKFLKTNAKESSGVTFSIEVYWKTVNFPTPVSSNTTTSE 253

Query: 566 LFINSVMSN 592
            F  S  SN
Sbjct: 254 KFSTSSRSN 262


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical
           protein K07G5.3 protein.
          Length = 1202

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 299 AAGDGEPVDDPSPFPSRAQRTPRNSRTSLKTLLLVHK 409
           A GDGE    P PF    +   +N R S+K  L+  K
Sbjct: 41  APGDGEQSPSPGPFTKDEKDKKQNRRESIKEHLMKFK 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,900
Number of Sequences: 27780
Number of extensions: 289372
Number of successful extensions: 1076
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2720181880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)