Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C19
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    31   0.16 
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    27   3.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   8.0  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 312 DLYLDNNSIAAVKELEGSEWFSTFRVLSLRGNYLKQIPVYAFDKAFQANNNIMHVFLGQN 491
           +LYL +N +         E+F   +VL+L  NYL +IP     K FQ  +++ H+F+  N
Sbjct: 810 ELYLVDNRLGN-DCFTALEYFKCLKVLNLSYNYLTEIP----SKFFQNFSDLKHLFVSGN 864


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 261 IDTIRSIVQNSHYKRLADLYLDNNSIAAVKELEGSEWFSTFRVLSLRGNYLKQI 422
           I TIR+I   +H K L +L+   N I  ++ LEG +  +    L L GN ++ I
Sbjct: 116 IKTIRNI---NHLKGLENLFFVQNRIRRIENLEGLDRLTN---LELGGNKIRVI 163


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 495 WRCDCHFIPRFQGLLLKYKR 554
           W+CD + + +F G + +YK+
Sbjct: 704 WQCDHNVVSKFDGTISQYKK 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,779
Number of Sequences: 5004
Number of extensions: 42740
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)