Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C19
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    46   3e-07
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   8.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 28/101 (27%), Positives = 42/101 (41%)
 Frame = +3

Query: 306  LADLYLDNNSIAAVKELEGSEWFSTFRVLSLRGNYLKQIPVYAFDKAFQANNNIMHVFLG 485
            L +LYL NN I  +  L       +  +L L GN L   PV+        N  ++ + LG
Sbjct: 868  LRELYLQNNLIGFIGNLTFLP-LRSLEILRLSGNRLVTFPVWQVT----LNARLVELSLG 922

Query: 486  QNPWRCDCHFIPRFQGLLLKYKRVIRDLTDIRCSKSXNPXP 608
             NPW C C F+      +      + D +D+ C    +  P
Sbjct: 923  SNPWSCRCKFLQELSSWVSDNAHKVVDASDVWCYYGGDARP 963



 Score = 25.0 bits (52), Expect = 0.90
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = +3

Query: 315 LYLDNNSIAAVKELEGSEWFSTFRVLSLRGNYLKQIPVYAFDKAFQANNN-IMHVFLGQN 491
           L+++NN I  V+    ++  +  RV  +  N ++ + + +      A +  +   ++G N
Sbjct: 622 LFINNNYINLVRPNTFTDKVNLTRV-DMYANMIETMELTSLLLTKVAEDRPLPEFYIGGN 680

Query: 492 PWRCDC--HFIPRF--QGLLLKYKRVIRDLTDIRCSKS 593
           P+ C+C   ++P    Q    +Y R++ DL ++ C  S
Sbjct: 681 PFNCNCSMDWLPGINNQTSTREYPRIM-DLDNVMCRTS 717


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 183 KSLKRILCHAKFKRISR*MTE 245
           KS K I C AK+K +   M E
Sbjct: 115 KSSKLIKCFAKYKTLKEIMNE 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,501
Number of Sequences: 438
Number of extensions: 3148
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)