Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C18
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         32   0.69 
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    30   2.8  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +1

Query: 652 PP*XXSXKSXXNSKXXNPXRXXKIPGFSPWKPPRAPPXSNPAVXRKTXPPFFP 810
           PP           K   P +  K P ++P KP   PP   P   + T PP+ P
Sbjct: 47  PPKEHKPPHHHEPKPEKPPKEHKPPAYTPPKPTPTPPTYTP-TPKPTPPPYTP 98


>07_03_0329 +
           16840051-16840917,16840999-16841342,16841444-16841574,
           16841671-16841792,16841877-16841983,16842104-16842236,
           16842342-16842458,16842560-16842667,16842716-16842742,
           16842759-16842830,16843462-16843584,16843671-16843833,
           16844140-16844264,16844355-16844489,16844574-16844677,
           16844772-16844834,16844930-16844993,16845186-16845318,
           16845414-16845487,16845603-16845697,16845799-16845830,
           16846201-16846355
          Length = 1097

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 773 GLEXGGARGGFQGENPGIFXXLXGFXXFELXXDFXEXXQGGGAXG 639
           G+E GG RGG++G+  G +    G    +    +     GGG  G
Sbjct: 101 GMEGGGGRGGYRGDGDGGYGRGGGGYHGDGERGYGRGGGGGGGGG 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,982
Number of Sequences: 37544
Number of extensions: 173134
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)