Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP02_F_C18
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z69383-11|CAM06588.1|  110|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/73 (28%), Positives = 23/73 (31%)
 Frame = +1

Query: 592 PXXGQXP*XGXXGGXFPXAPPP*XXSXKSXXNSKXXNPXRXXKIPGFSPWKPPRAPPXSN 771
           P     P     GG  P  PPP          S    P R    P     +PPR PP   
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPP--PRRPPMTPPSPQRRPPRTPPSPE 179

Query: 772 PAVXRKTXPPFFP 810
           P    +T P   P
Sbjct: 180 PRNPPRTPPSPIP 192


>Z69383-11|CAM06588.1|  110|Caenorhabditis elegans Hypothetical
           protein F13E9.15 protein.
          Length = 110

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 809 GKKGGXVFRXTAGLEXGGARGGFQGENPGIF 717
           G++GG   +   G+  GG +GG QG NPG F
Sbjct: 79  GQQGGQPGQGNGGM-GGGQQGGNQGNNPGNF 108


>Z78413-7|CAB01657.1|  352|Caenorhabditis elegans Hypothetical
           protein T01C3.7 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 800 GGXVFRXTAGLEXGGARGGFQGENPG 723
           GG  FR   G + GG+RGGF G   G
Sbjct: 11  GGGGFRGGRGGDRGGSRGGFGGGGRG 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,553,852
Number of Sequences: 27780
Number of extensions: 117959
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)